DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6092 contig Csv1_Contig6092:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORDL (Protein recA OS=Borrelia duttonii (strain Ly) GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.499e-28
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            L++++A++ A   I   FGK S+ ++G S  G  +E+ PSG + LD A+G GG P+GR+VEIFGPESSGKTTL L AIAE+QK GG A  +DAEHA DP Y++AL
Sbjct:   16 LNKEKAIELARVQIEKDFGKGSLIKMGESPVGKYLESIPSGSILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARAL 120          

HSP 2 Score: 34.2686 bits (77), Expect = 1.499e-28
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++  L +   D GE AL+IA+ + RSG +DL
Sbjct:  121 GVNINELWLSQPDTGEQALDIAEYLIRSGGVDL 153          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORT9 (Protein recA OS=Borrelia turicatae (strain 91E135) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.499e-28
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  350 LDRQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            L+R++A++ A   I   FGK S+ ++G S  G  +E+  SG + LD A+G GG P+GRI+EIFGPESSGKTTL L AI+EVQK GG A  +DAEHA DP Y+KAL
Sbjct:   16 LNREKAIELARIQIEKDFGKGSLIKMGESPVGKGIESISSGSILLDEAIGVGGYPRGRIIEIFGPESSGKTTLTLQAISEVQKNGGIAAFIDAEHALDPVYAKAL 120          

HSP 2 Score: 36.965 bits (84), Expect = 1.499e-28
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+++ L +   D GE ALEIA+ + RSG +DL
Sbjct:  118 KALGVNIDELWLSQPDTGEQALEIAEYLIRSGGVDL 153          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURPS (Protein recA OS=Burkholderia pseudomallei GN=recA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.500e-28
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  326 SDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            S  G     ++ +AL AA+  I   FGK S+ RLG  G A+  ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y+  L
Sbjct:    4 SKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKL 116          

HSP 2 Score: 38.5058 bits (88), Expect = 1.500e-28
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEI D + RSG+ID+
Sbjct:  117 GVNVPELLISQPDTGEQALEIVDALVRSGSIDM 149          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURMA (Protein recA OS=Burkholderia mallei GN=recA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.500e-28
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  326 SDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            S  G     ++ +AL AA+  I   FGK S+ RLG  G A+  ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y+  L
Sbjct:    4 SKKGSGLTAEKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKL 116          

HSP 2 Score: 38.5058 bits (88), Expect = 1.500e-28
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEI D + RSG+ID+
Sbjct:  117 GVNVPELLISQPDTGEQALEIVDALVRSGSIDM 149          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AERHH (Protein recA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=recA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.500e-28
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA+  I   FGK S+ RLG +    +E   +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKL 106          

HSP 2 Score: 38.5058 bits (88), Expect = 1.500e-28
Identity = 16/35 (45.71%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L++   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLISQPDTGEQALEICDMLVRSNAVDVII 141          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RALEJ (Protein recA OS=Ralstonia eutropha (strain JMP134) GN=recA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.500e-28
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK S+ R+G       ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D +Y+  L
Sbjct:   13 EKQKALAAALSQIEKQFGKGSIMRMGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKL 116          

HSP 2 Score: 40.817 bits (94), Expect = 1.500e-28
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV  L++   D GE ALEI D + RSG+IDL
Sbjct:  117 GVDVGELLISQPDTGEQALEITDALVRSGSIDL 149          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DECAR (Protein recA OS=Dechloromonas aromatica (strain RCB) GN=recA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.501e-28
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ ++G A     ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG A  +DAEHA DP Y++ L
Sbjct:    4 NKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVVAEMQKLGGVAAFIDAEHALDPQYAQKL 107          

HSP 2 Score: 39.6614 bits (91), Expect = 1.501e-28
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V +L++   D GE ALEIAD + RSG++D+
Sbjct:  108 GVNVGDLLISQPDTGEQALEIADMLVRSGSVDI 140          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MYCPU (Protein recA OS=Mycoplasma pulmonis GN=recA PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.501e-28
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  362 RALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + + + + +I   FG ES+  LG      V+ F SG   ++ ALG GG PKGRI+EIFGPESSGKTT+ALH IAE+QK  G A  +D EH+ DP Y+K L
Sbjct:   15 KIIKSTIEEIEKKFGNESIMLLGQKEKCDVDVFSSGSYAINSALGIGGFPKGRIIEIFGPESSGKTTIALHTIAEIQKKNGFAAFIDVEHSIDPVYAKNL 114          

HSP 2 Score: 44.669 bits (104), Expect = 1.501e-28
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K+ G+D++NL++   D+GE ALEI D + +SG+IDL
Sbjct:  112 KNLGIDIDNLLISQPDSGEQALEIVDILAKSGSIDL 147          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_RHOBA (Protein recA OS=Rhodopirellula baltica GN=recA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.951e-28
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  317 GFSSDSGDSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALGG-GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            G   D G    L+++  L   +  I  SFG  ++  LG++    ++   +G L+LD+ALGG G+P+GRI+E+FGPESSGKTTLALH  AE QK GG A ++DAEHAFDPS++K L
Sbjct:   15 GVKLDPGMKTILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLTIDCISTGSLSLDMALGGKGIPRGRIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKL 129          

HSP 2 Score: 31.9574 bits (71), Expect = 1.951e-28
Identity = 12/38 (31.58%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            K  GV++++L+V    +GE A++I + + +S A+D+ +
Sbjct:  127 KKLGVELDSLLVSQPSSGEEAMQICEMLVKSNAVDVII 164          
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA2_MYXXA (Protein recA 2 OS=Myxococcus xanthus GN=recA2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.953e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 2
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++A++ AM+ +   FGK S+ RLG+    +  V+  P+G ++LD+ALG GG+PKGRI+EIFGPESSGKTTL LH +AE QK GG    VDAEHA D  Y++ L
Sbjct:    6 EKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKL 110          

HSP 2 Score: 37.3502 bits (85), Expect = 1.953e-28
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV  ++L++   D GE ALEIA+ + RSGAID+
Sbjct:  111 GVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDV 143          
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_BORDL1.499e-2855.24Protein recA OS=Borrelia duttonii (strain Ly) GN=r... [more]
RECA_BORT91.499e-2856.19Protein recA OS=Borrelia turicatae (strain 91E135)... [more]
RECA_BURPS1.500e-2852.63Protein recA OS=Burkholderia pseudomallei GN=recA ... [more]
RECA_BURMA1.500e-2852.63Protein recA OS=Burkholderia mallei GN=recA PE=3 S... [more]
RECA_AERHH1.500e-2856.31Protein recA OS=Aeromonas hydrophila subsp. hydrop... [more]
RECA_RALEJ1.500e-2851.92Protein recA OS=Ralstonia eutropha (strain JMP134)... [more]
RECA_DECAR1.501e-2852.88Protein recA OS=Dechloromonas aromatica (strain RC... [more]
RECA_MYCPU1.501e-2851.00Protein recA OS=Mycoplasma pulmonis GN=recA PE=3 S... [more]
RECA_RHOBA1.951e-2849.57Protein recA OS=Rhodopirellula baltica GN=recA PE=... [more]
RECA2_MYXXA1.953e-2852.38Protein recA 2 OS=Myxococcus xanthus GN=recA2 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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