DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CUPTR (Protein recA OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.953e-28
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA++ I   FGK S+ RLG       ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG    +DAEHA D +Y+  L
Sbjct:   13 EKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKL 116

HSP 2 Score: 39.6614 bits (91), Expect = 1.953e-28
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V +L++   D GE ALEI D + RSG+IDL +
Sbjct:  117 GVNVGDLLISQPDTGEQALEITDALVRSGSIDLII 151

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EDWI9 (Protein recA OS=Edwardsiella ictaluri (strain 93-146) GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.953e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++QRAL AA+  I   FGK S+ RLG      +E+  +G L+LD+ALG GGLP GRIVEIFGPESSGKTTL L  IA  Q  G     +DAEHA DP Y+  L
Sbjct:    4 NKQRALAAALGQIEKQFGKGSIMRLGDTQTLDIESISTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIACAQAAGKTCAFIDAEHALDPIYAAKL 106

HSP 2 Score: 41.2022 bits (95), Expect = 1.953e-28
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RSGA+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEICDALVRSGAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AZOVI (Protein recA OS=Azotobacter vinelandii GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.954e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKL 106

HSP 2 Score: 38.891 bits (89), Expect = 1.954e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AZOVD (Protein recA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.954e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKL 106

HSP 2 Score: 38.891 bits (89), Expect = 1.954e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_ALTMD (Protein recA OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=recA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.954e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK ++ RLG      +E   +G LT+D+ALG GGLP GR+VEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y++ L
Sbjct:    4 NKSKALTAAVGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKNGKTCAFVDAEHALDPVYAEKL 106

HSP 2 Score: 40.4318 bits (93), Expect = 1.954e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+++ L+V   D GE ALEI D + RSGA+D+ +
Sbjct:  107 GVNIDELLVSQPDTGEQALEICDMLVRSGAVDVVI 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AZOSE (Protein recA OS=Azoarcus sp. (strain EbN1) GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.954e-28
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL---VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R+G   G +   ++T  +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y++ L
Sbjct:    4 NKAKALAAALSQIEKQFGKGSIMRMGD--GTIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKL 107

HSP 2 Score: 38.891 bits (89), Expect = 1.954e-28
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L++   D GE ALEIAD + RSG +++
Sbjct:  108 GVNIQDLLISQPDTGEQALEIADMLVRSGGVEI 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AZOSB (Protein recA OS=Azoarcus sp. (strain BH72) GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.954e-28
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA++ I   FGK S+ R+G       ++T  +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE+QKLGG A  +DAEHA D  Y++ L
Sbjct:    4 NKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVGYAEKL 107

HSP 2 Score: 38.891 bits (89), Expect = 1.954e-28
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEIAD + RSG +D+
Sbjct:  108 GVNITDLLISQPDTGEQALEIADMLVRSGGVDV 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLTR (Protein recA OS=Chlamydia trachomatis GN=recA PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.543e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            DR+RAL+AA+  I   FG  S+  LG    A  + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP+Y+
Sbjct:    5 DRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYA 105

HSP 2 Score: 33.113 bits (74), Expect = 2.543e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLTB (Protein recA OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=recA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.543e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            DR+RAL+AA+  I   FG  S+  LG    A  + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP+Y+
Sbjct:    5 DRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYA 105

HSP 2 Score: 33.113 bits (74), Expect = 2.543e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLTA (Protein recA OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=recA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.543e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS 649
            DR+RAL+AA+  I   FG  S+  LG    A  + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP+Y+
Sbjct:    5 DRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYA 105

HSP 2 Score: 33.113 bits (74), Expect = 2.543e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_CUPTR	1.953e-28	52.88	Protein recA OS=Cupriavidus taiwanensis (strain R1...	[more]
RECA_EDWI9	1.953e-28	55.34	Protein recA OS=Edwardsiella ictaluri (strain 93-1...	[more]
RECA_AZOVI	1.954e-28	55.34	Protein recA OS=Azotobacter vinelandii GN=recA PE=...	[more]
RECA_AZOVD	1.954e-28	55.34	Protein recA OS=Azotobacter vinelandii (strain DJ ...	[more]
RECA_ALTMD	1.954e-28	53.40	Protein recA OS=Alteromonas macleodii (strain DSM ...	[more]
RECA_AZOSE	1.954e-28	53.77	Protein recA OS=Azoarcus sp. (strain EbN1) GN=recA...	[more]
RECA_AZOSB	1.954e-28	52.88	Protein recA OS=Azoarcus sp. (strain BH72) GN=recA...	[more]
RECA_CHLTR	2.543e-28	59.41	Protein recA OS=Chlamydia trachomatis GN=recA PE=3...	[more]
RECA_CHLTB	2.543e-28	59.41	Protein recA OS=Chlamydia trachomatis (strain L2b/...	[more]
RECA_CHLTA	2.543e-28	59.41	Protein recA OS=Chlamydia trachomatis (strain A/HA...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC