DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEA8 (Protein recA OS=Pseudomonas aeruginosa (strain LESB58) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.312e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 3.312e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEA7 (Protein recA OS=Pseudomonas aeruginosa (strain PA7) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.312e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 3.312e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_WOLTR (Protein recA OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=recA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.309e-28
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DRQ+ALD A++ I  +FGK ++ +L       ++T  +G + LD ALG GGLPKGRIVEIFGPESSGKTTLALH IAE QK GG    +DAEHA D  Y++ L
Sbjct:   11 DRQKALDNAISQIEKAFGKGAIMKLKQNPVEKIDTISTGSIALDSALGVGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVMYARKL 113

HSP 2 Score: 31.9574 bits (71), Expect = 4.309e-28
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ +NL++   D GE AL I + +  S A+D+
Sbjct:  114 GVNTDNLVISQPDTGEQALHIVEYLVCSSAVDV 146

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEU2 (Protein recA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.309e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.309e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSESM (Protein recA OS=Pseudomonas syringae pv. tomato GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.309e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.309e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEPU (Protein recA OS=Pseudomonas putida GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.309e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.309e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEE4 (Protein recA OS=Pseudomonas entomophila (strain L48) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.309e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.309e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSE14 (Protein recA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.309e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.309e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLCH (Protein recA OS=Chlorobium chlorochromatii (strain CaD3) GN=recA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.310e-28
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 2

Query:  362 RALDAAMNDINSSFGKESVTRLGS-AGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + L+ A++ +   FGK ++ R+G  + G  V+   +G + LD ALG GGLP+GR+ EI+GPESSGKTTLALH IAE QK GG   +VDAEHAFDPSY++ L
Sbjct:   21 KQLNLAVDALEKQFGKGTIMRMGDGSAGLTVQAISTGSMALDFALGVGGLPRGRVTEIYGPESSGKTTLALHVIAEAQKEGGITAIVDAEHAFDPSYARKL 121

HSP 2 Score: 35.4242 bits (80), Expect = 4.310e-28
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVD+  L++   ++GE AL I + + RSGA+D+
Sbjct:  122 GVDINALLISQPESGEQALSIVETLVRSGAVDV 154

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_AERS4 (Protein recA OS=Aeromonas salmonicida (strain A449) GN=recA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.310e-28
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++Q+AL AA+  I   FGK S+ RLG +    +E   +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L  IAE QK G     +DAEHA DP Y+  L
Sbjct:    4 NKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKL 106

HSP 2 Score: 38.5058 bits (88), Expect = 4.310e-28
Identity = 16/35 (45.71%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L++   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLISQPDTGEQALEICDMLVRSNAVDVII 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_PSEA8	3.312e-28	55.34	Protein recA OS=Pseudomonas aeruginosa (strain LES...	[more]
RECA_PSEA7	3.312e-28	55.34	Protein recA OS=Pseudomonas aeruginosa (strain PA7...	[more]
RECA_WOLTR	4.309e-28	57.28	Protein recA OS=Wolbachia sp. subsp. Brugia malayi...	[more]
RECA_PSEU2	4.309e-28	53.40	Protein recA OS=Pseudomonas syringae pv. syringae ...	[more]
RECA_PSESM	4.309e-28	53.40	Protein recA OS=Pseudomonas syringae pv. tomato GN...	[more]
RECA_PSEPU	4.309e-28	55.34	Protein recA OS=Pseudomonas putida GN=recA PE=3 SV...	[more]
RECA_PSEE4	4.309e-28	55.34	Protein recA OS=Pseudomonas entomophila (strain L4...	[more]
RECA_PSE14	4.309e-28	53.40	Protein recA OS=Pseudomonas syringae pv. phaseolic...	[more]
RECA_CHLCH	4.310e-28	54.46	Protein recA OS=Chlorobium chlorochromatii (strain...	[more]
RECA_AERS4	4.310e-28	55.34	Protein recA OS=Aeromonas salmonicida (strain A449...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC