DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSETO (Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.310e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.310e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEFS (Protein recA OS=Pseudomonas fluorescens (strain SBW25) GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.310e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.310e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEFL (Protein recA OS=Pseudomonas fluorescens GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.310e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK+G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 4.310e-28
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V++L+V   D GE ALEI D + RS AID+
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAIDV 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURCJ (Protein recA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.311e-28
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ R+G    A  ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y+  L
Sbjct:    4 EKSKALAAALAQIEKQFGKGSIMRMGDGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKL 107

HSP 2 Score: 38.5058 bits (88), Expect = 4.311e-28
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEI D + RSG+ID+
Sbjct:  108 GVNVPELLISQPDTGEQALEITDALVRSGSIDM 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURCE (Protein recA OS=Burkholderia cepacia GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.311e-28
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ R+G    A  ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG A  +DAEHA D  Y+  L
Sbjct:    4 EKSKALAAALAQIEKQFGKGSIMRMGDGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKL 107

HSP 2 Score: 38.5058 bits (88), Expect = 4.311e-28
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEI D + RSG+ID+
Sbjct:  108 GVNVPELLISQPDTGEQALEITDALVRSGSIDM 140

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PASHA (Protein recA OS=Pasteurella haemolytica GN=recA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.607e-28
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++AL AA+  I   FGK S+ +LG      +E   +G L LD ALG GGLP GRIVEI+GPESSGKTTL L  +A+ QK G     +DAEHA DP Y++ L
Sbjct:   20 KEKALAAALAQIEKQFGKGSIMKLGDTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGKTCAFIDAEHALDPIYARKL 121

HSP 2 Score: 43.1282 bits (100), Expect = 5.607e-28
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GVD + L++   DNGE ALEI D + RSGA+D+ +
Sbjct:  122 GVDTDGLLISQPDNGEQALEICDALVRSGAVDVII 156

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEPW (Protein recA OS=Pseudomonas putida (strain W619) GN=recA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.610e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERTGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKSGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 5.610e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CAMHC (Protein recA OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.612e-28
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++ L++A+  I+ +FGK ++ RLG      +++  +G + LD+ALG GG+PKGRIVEI+GPESSGKTTL LH IAE QK GG    VDAEHA D  Y+  L
Sbjct:    4 NKKKMLESALKSIDKAFGKGTLVRLGDKEVEKIDSISTGSVGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHIIAECQKKGGVCAFVDAEHALDVKYAANL 106

HSP 2 Score: 40.4318 bits (93), Expect = 5.612e-28
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GVDV+NL V   D GE AL+I + + +SGAIDL
Sbjct:  107 GVDVDNLYVSQPDFGEQALDIVETLAKSGAIDL 139

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEST (Protein recA OS=Pseudomonas stutzeri GN=recA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.613e-28
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      + +  +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA  Q++G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAAAQRMGSTCAFVDAEHALDPDYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 5.613e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EHRCR (Protein recA OS=Ehrlichia chaffeensis (strain Arkansas) GN=recA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.303e-28
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD+A++ I  +FG+ ++ +L       +++  +G + LD ALG GG PKGRIVEIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   10 ERQKALDSAISQIEKAFGRGAIMKLKQGAIEKIDSISTGSIALDTALGIGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKL 112

HSP 2 Score: 31.9574 bits (71), Expect = 7.303e-28
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+  +LIV   D GE AL I + +  SGAID+
Sbjct:  113 GVNTGDLIVSQPDTGEQALHIVEYLVCSGAIDV 145

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_PSETO	4.310e-28	53.40	Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 ...	[more]
RECA_PSEFS	4.310e-28	53.40	Protein recA OS=Pseudomonas fluorescens (strain SB...	[more]
RECA_PSEFL	4.310e-28	53.40	Protein recA OS=Pseudomonas fluorescens GN=recA PE...	[more]
RECA_BURCJ	4.311e-28	53.85	Protein recA OS=Burkholderia cepacia (strain J2315...	[more]
RECA_BURCE	4.311e-28	53.85	Protein recA OS=Burkholderia cepacia GN=recA PE=3 ...	[more]
RECA_PASHA	5.607e-28	51.96	Protein recA OS=Pasteurella haemolytica GN=recA PE...	[more]
RECA_PSEPW	5.610e-28	55.34	Protein recA OS=Pseudomonas putida (strain W619) G...	[more]
RECA_CAMHC	5.612e-28	51.46	Protein recA OS=Campylobacter hominis (strain ATCC...	[more]
RECA_PSEST	5.613e-28	53.40	Protein recA OS=Pseudomonas stutzeri GN=recA PE=3 ...	[more]
RECA_EHRCR	7.303e-28	54.37	Protein recA OS=Ehrlichia chaffeensis (strain Arka...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC