DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6092	contig	Csv1_Contig6092:1..786.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESVM (Protein recA OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=recA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.303e-28
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R+ AL  A++ I   +G+ SV +L       +   P+G + LDLALG GG+P+GR+ EI+GPESSGKTTLALH IAE QKLGG A  +DAEHA D +Y++ L
Sbjct:   13 RREALSTALSTIERKYGQGSVMKLSDTAHVNIPVIPTGSIGLDLALGVGGIPRGRVSEIYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRL 114

HSP 2 Score: 35.4242 bits (80), Expect = 7.303e-28
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            +  GV  + L++   D GE AL+IAD + RS A+D+
Sbjct:  112 RRLGVKTDELLISQPDFGEQALDIADMLVRSSAVDI 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESDA (Protein recA OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=recA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.303e-28
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R  AL  A+  I   +GK +V +L       +   P+G + LDLALG GG+P+GRI EIFGPESSGKTTL LH IAE Q+LGG    VDAEHA D SY++ L
Sbjct:   13 RAEALGTALATIERKYGKGAVMKLSDDAHVNIPVIPTGSIGLDLALGVGGIPRGRISEIFGPESSGKTTLTLHIIAECQRLGGTCAFVDAEHALDVSYARRL 114

HSP 2 Score: 39.6614 bits (91), Expect = 7.303e-28
Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            +  GV+ + L++   D GE AL+IAD + RSGA+DL
Sbjct:  112 RRLGVNTDELLISQPDYGEQALDIADMLVRSGAVDL 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEPG (Protein recA OS=Pseudomonas putida (strain GB-1) GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.304e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDQERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 7.304e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEPF (Protein recA OS=Pseudomonas fluorescens (strain Pf0-1) GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.305e-28
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 7.305e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORBZ (Protein recA OS=Borrelia burgdorferi (strain ZS7) GN=recA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.504e-28
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ A++ A   I  +FGK S+ ++G S  G  +++  SG + LD ALG GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA DP Y+KAL
Sbjct:   20 KEEAIELARVQIEKAFGKGSLIKMGESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKAL 122

HSP 2 Score: 36.965 bits (84), Expect = 9.504e-28
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+V  L +   D GE ALEIA+ + RSG +DL
Sbjct:  120 KALGVNVAELWLSQPDTGEQALEIAEHLIRSGGVDL 155

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORBU (Protein recA OS=Borrelia burgdorferi GN=recA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.504e-28
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ A++ A   I  +FGK S+ ++G S  G  +++  SG + LD ALG GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA DP Y+KAL
Sbjct:   20 KEEAIELARVQIEKAFGKGSLIKMGESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKAL 122

HSP 2 Score: 36.965 bits (84), Expect = 9.504e-28
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+V  L +   D GE ALEIA+ + RSG +DL
Sbjct:  120 KALGVNVAELWLSQPDTGEQALEIAEHLIRSGGVDL 155

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORAP (Protein recA OS=Borrelia afzelii (strain PKo) GN=recA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.504e-28
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ A++ A   I  +FGK S+ ++G S  G  +++  SG + LD ALG GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA DP Y+KAL
Sbjct:   20 KEEAVELARVQIEKTFGKGSLIKMGESPVGKGIKSISSGSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKAL 122

HSP 2 Score: 37.3502 bits (85), Expect = 9.504e-28
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+V  L +   D GE ALEIA+ + RSG IDL
Sbjct:  120 KALGVNVAELWLSQPDTGEQALEIAEHLIRSGGIDL 155

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEPK (Protein recA OS=Pseudomonas putida (strain KT2440) GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.508e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 9.508e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEP1 (Protein recA OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.508e-28
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +++RAL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 9.508e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_PSEF5 (Protein recA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.511e-28
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++++AL AA+  I   FGK +V R+G      +    +G L LD+ALG GGLPKGRIVEI+GPESSGKTTL L  IA+ QK G     VDAEHA DP Y+  L
Sbjct:    4 NKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKL 106

HSP 2 Score: 38.891 bits (89), Expect = 9.511e-28
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V++L+V   D GE ALEI D + RS A+D+ +
Sbjct:  107 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVII 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_DESVM	7.303e-28	52.94	Protein recA OS=Desulfovibrio vulgaris (strain Miy...	[more]
RECA_DESDA	7.303e-28	53.92	Protein recA OS=Desulfovibrio desulfuricans (strai...	[more]
RECA_PSEPG	7.304e-28	55.34	Protein recA OS=Pseudomonas putida (strain GB-1) G...	[more]
RECA_PSEPF	7.305e-28	53.40	Protein recA OS=Pseudomonas fluorescens (strain Pf...	[more]
RECA_BORBZ	9.504e-28	56.31	Protein recA OS=Borrelia burgdorferi (strain ZS7) ...	[more]
RECA_BORBU	9.504e-28	56.31	Protein recA OS=Borrelia burgdorferi GN=recA PE=3 ...	[more]
RECA_BORAP	9.504e-28	56.31	Protein recA OS=Borrelia afzelii (strain PKo) GN=r...	[more]
RECA_PSEPK	9.508e-28	55.34	Protein recA OS=Pseudomonas putida (strain KT2440)...	[more]
RECA_PSEP1	9.508e-28	55.34	Protein recA OS=Pseudomonas putida (strain F1 / AT...	[more]
RECA_PSEF5	9.511e-28	53.40	Protein recA OS=Pseudomonas fluorescens (strain Pf...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC