DR403425 | Citrus Genome Database

Overview


Name	DR403425
Unique Name	DR403425
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_HERAR (Protein recA OS=Herminiimonas arsenicoxydans GN=recA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.237e-27
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVE---TFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I   FGK SV R+    GA+VE      +G L LDLALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG    +DAEHA D +Y++ L
Sbjct:   11 DKSKALAAALAQIEKQFGKGSVMRMED--GAVVEEVQVVSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKL 114

HSP 2 Score: 37.3502 bits (85), Expect = 1.237e-27
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G+++  L++   D GE ALEI D + RSG +DL
Sbjct:  115 GINLSELLISQPDTGEQALEICDALVRSGGVDL 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BORGA (Protein recA OS=Borrelia garinii GN=recA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.237e-27
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLG-SAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ A++ A   I  +FGK S+ ++G S+ G  +++  SG + LD ALG GG P+GRI+EIFGPESSGKTTL L AIAEVQK GG A  +DAEHA +P Y+KAL
Sbjct:   20 KEEAIELARVQIEKTFGKGSLIKIGESSVGKGIKSISSGSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAKAL 122

HSP 2 Score: 37.7354 bits (86), Expect = 1.237e-27
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            K  GV+V  L +   D GE ALEIA+ + RSG IDL
Sbjct:  120 KALGVNVSELWLSQPDTGEQALEIAEHLIRSGGIDL 155

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLFF (Protein recA OS=Chlamydophila felis (strain Fe/C-56) GN=recA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.238e-27
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+AA+  I   FG  S+  LG       + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP Y+  +
Sbjct:    5 DRKKALEAAIAYIEKQFGSGSIMSLGKHSATHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLI 108

HSP 2 Score: 33.113 bits (74), Expect = 1.238e-27
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_JANMA (Protein recA OS=Janthinobacterium sp. (strain Marseille) GN=recA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.610e-27
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVE---TFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I   FGK SV R+    GA+VE      +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QKLGG    +DAEHA D +Y++ L
Sbjct:   11 DKSKALAAALAQIEKQFGKGSVMRMED--GAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKL 114

HSP 2 Score: 37.7354 bits (86), Expect = 1.610e-27
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G+++ +L++   D GE ALEI D + RSG +DL
Sbjct:  115 GINLSDLLISQPDTGEQALEICDALVRSGGVDL 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_EHRCJ (Protein recA OS=Ehrlichia canis (strain Jake) GN=recA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.611e-27
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +RQ+ALD A++ I  +FG+ ++ +L       +++  +G + LD ALG GG PKGRIVEIFGPESSGKTTLALH IAE QK GGN   +DAEHA D  Y++ L
Sbjct:   10 ERQKALDNAISQIEKAFGRGAIMKLKQGAIEKIDSISTGSIALDTALGIGGFPKGRIVEIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKL 112

HSP 2 Score: 31.9574 bits (71), Expect = 1.611e-27
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+  +LIV   D GE AL I + +  SGAID+
Sbjct:  113 GVNTGDLIVSQPDTGEQALHIVEYLVCSGAIDV 145

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESMR (Protein recA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.611e-27
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 2

Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R  AL  A+  I    G+ +V RL  +    +   P+G + LDLALG GG+PKGRI EI+GPESSGKTTLALH IAE QKLGG A  +DAEHA D +Y++ L
Sbjct:   13 RSEALATALTTIERKHGQGAVMRLEDSAHVKIPAIPTGSIGLDLALGIGGIPKGRITEIYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRL 114

HSP 2 Score: 35.8094 bits (81), Expect = 1.611e-27
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 3

Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            +  GV+   +++   D GE AL+IAD + RSGA+D+
Sbjct:  112 RRLGVNTPEMLISQPDFGEQALDIADLLVRSGAVDV 147

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLCV (Protein recA OS=Chlamydophila caviae GN=recA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.612e-27
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+AA+  I   FG  S+  LG       + T  +G L+LDLALG GG+PKGRIVEIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DP Y+  +
Sbjct:    5 DRKKALEAAIAYIEKQFGAGSIMSLGKHSATHEISTIKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLI 108

HSP 2 Score: 33.113 bits (74), Expect = 1.612e-27
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            G ++ +L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GANINDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_MARAV (Protein recA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=recA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.612e-27
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R++AL AA++ I   FGK +V ++G      +    +G L LD+ALG GGLP GRIVEI+GPESSGKTTL L  IAE QK G     VDAEHA DP Y++ L
Sbjct:    4 NRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAEKL 106

HSP 2 Score: 40.0466 bits (92), Expect = 1.612e-27
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDLYL 764
            GV+V+ L+V   D GE ALEIAD + RS A+D+ +
Sbjct:  107 GVNVDELLVSQPDTGEQALEIADMLVRSNAVDVII 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHLPN (Protein recA OS=Chlamydia pneumoniae GN=recA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.098e-27
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            DR++AL+AA+  I   FG  S+  LG       + T  +G L+LDLALG  G+PKGR++EIFGPESSGKTTLA H +A  QK+GG A  +DAEHA DPSY+  +
Sbjct:    5 DRKKALEAAVAYIEKQFGAGSIMSLGRHSATHEISTIKTGALSLDLALGIHGVPKGRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLI 108

HSP 2 Score: 35.4242 bits (80), Expect = 2.098e-27
Identity = 15/33 (45.45%), Postives = 25/33 (75.76%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L++   D GE AL IA+ + RSGA+D+
Sbjct:  109 GVNIDDLMISQPDCGEDALSIAELLARSGAVDV 141

[Close]

BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHRVO (Protein recA OS=Chromobacterium violaceum GN=recA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.098e-27
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 2

Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+ +AL AA+  I   FGK S+ R+        ++   +G LTLDLALG GGLP+GR+VEI+GPESSGKTTL L A+AE QKLGG    +DAE+A DP Y++ L
Sbjct:    5 DKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKL 108

HSP 2 Score: 37.7354 bits (86), Expect = 2.098e-27
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 3

Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+VE+L++   D GE ALEI D + RS  +D+
Sbjct:  109 GVNVEDLLISQPDTGEQALEICDMLVRSSGVDV 141

The following BLAST results are available for this feature:

BLAST of DR403425 vs. ExPASy Swiss-Prot

BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RECA_HERAR	1.237e-27	56.60	Protein recA OS=Herminiimonas arsenicoxydans GN=re...	[more]
RECA_BORGA	1.237e-27	55.34	Protein recA OS=Borrelia garinii GN=recA PE=3 SV=1	[more]
RECA_CHLFF	1.238e-27	55.77	Protein recA OS=Chlamydophila felis (strain Fe/C-5...	[more]
RECA_JANMA	1.610e-27	55.66	Protein recA OS=Janthinobacterium sp. (strain Mars...	[more]
RECA_EHRCJ	1.611e-27	54.37	Protein recA OS=Ehrlichia canis (strain Jake) GN=r...	[more]
RECA_DESMR	1.611e-27	54.90	Protein recA OS=Desulfovibrio magneticus (strain A...	[more]
RECA_CHLCV	1.612e-27	55.77	Protein recA OS=Chlamydophila caviae GN=recA PE=3 ...	[more]
RECA_MARAV	1.612e-27	53.40	Protein recA OS=Marinobacter aquaeolei (strain ATC...	[more]
RECA_CHLPN	2.098e-27	53.85	Protein recA OS=Chlamydia pneumoniae GN=recA PE=3 ...	[more]
RECA_CHRVO	2.098e-27	53.85	Protein recA OS=Chromobacterium violaceum GN=recA ...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC