DR403425

Overview
NameDR403425
Unique NameDR403425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BURS3 (Protein recA OS=Burkholderia sp. (strain 383) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.098e-27
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK S+ R+G       ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  IAE+QK+GG A  +DAEHA D  Y+  L
Sbjct:    4 EKSKALAAALAQIEKQFGKGSIMRMGDGEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKL 107

HSP 2 Score: 38.5058 bits (88), Expect = 2.098e-27
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+V  L++   D GE ALEI D + RSG+ID+
Sbjct:  108 GVNVPELLISQPDTGEQALEITDALVRSGSIDM 140
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESVV (Protein recA OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.730e-27
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R+ AL+ A++ I   +G  +V +L       +   P+G + LDLALG GG+P+GR+ EI+GPESSGKTTL LH IAE QK GG A  +DAEHA D +Y++ L
Sbjct:   13 RREALETALSTIERKYGLGAVMKLSDEAHVAIPVIPTGSIGLDLALGVGGVPRGRVTEIYGPESSGKTTLTLHIIAEAQKRGGTAAFIDAEHALDVAYARRL 114

HSP 2 Score: 38.1206 bits (87), Expect = 2.730e-27
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            +  GV+ E L++   D GE AL+IAD + RS A+DL
Sbjct:  112 RRLGVNTEELLISQPDFGEQALDIADMLVRSAAVDL 147
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DESVH (Protein recA OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.730e-27
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:  356 RQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            R+ AL+ A++ I   +G  +V +L       +   P+G + LDLALG GG+P+GR+ EI+GPESSGKTTL LH IAE QK GG A  +DAEHA D +Y++ L
Sbjct:   13 RREALETALSTIERKYGLGAVMKLSDEAHVAIPVIPTGSIGLDLALGVGGVPRGRVTEIYGPESSGKTTLTLHIIAEAQKRGGTAAFIDAEHALDVAYARRL 114

HSP 2 Score: 38.1206 bits (87), Expect = 2.730e-27
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 3 
Query:  651 KHXGVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            +  GV+ E L++   D GE AL+IAD + RS A+DL
Sbjct:  112 RRLGVNTEELLISQPDFGEQALDIADMLVRSAAVDL 147
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_LARHH (Protein recA OS=Laribacter hongkongensis (strain HLHK9) GN=recA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.731e-27
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            D+Q+AL AA++ I   FGK S+ R+        ++   +G L LD+ALG GGLP+GR+VEI+GPESSGKTTL L  +AE QKLGG    +DAE+A DP Y+  L
Sbjct:    5 DKQKALSAALSQIEKQFGKGSIMRMNETQVNDNLQVISTGSLGLDMALGVGGLPRGRVVEIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPVYAGKL 108

HSP 2 Score: 38.5058 bits (88), Expect = 2.731e-27
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV V++L+V   D GE ALEI D + RSG +D+
Sbjct:  109 GVKVDDLLVSQPDTGEQALEICDMLVRSGGVDV 141
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_CHRSD (Protein recA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.731e-27
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            +R +AL+AA++ I   FGK +V RLG           +G L LD+ALG GGLP GR+VEIFGPESSGKTT+ L  IA+ QK G     +DAEHA DP+Y++ L
Sbjct:    6 NRSKALNAALSQIERQFGKGAVMRLGDTPRVATPAISTGSLGLDIALGVGGLPMGRVVEIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKL 108

HSP 2 Score: 38.1206 bits (87), Expect = 2.731e-27
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++++L+V   D GE ALEI D + RSG +D+
Sbjct:  109 GVNLDDLLVSQPDTGEQALEICDMLVRSGGVDV 141
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_BDEBA (Protein recA OS=Bdellovibrio bacteriovorus GN=recA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.622e-27
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL+ A++ I   FGK S+ RLG+    +  VE   +G L+LD+ALG GGLPKGRI EI+GPESSGKTTL L  IA+ QK GG    VDAEHA D +Y++ L
Sbjct:   13 EKIKALELAVSTIEKQFGKGSIMRLGANESLVKDVEAISTGALSLDIALGIGGLPKGRICEIYGPESSGKTTLCLSVIAQAQKKGGVVAFVDAEHALDINYARKL 117

HSP 2 Score: 38.891 bits (89), Expect = 4.622e-27
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+ E+L++   D GE ALEI + + RSGAID+
Sbjct:  118 GVNTEDLLISQPDTGEQALEITETLVRSGAIDV 150
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_DELAS (Protein recA OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=recA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.624e-27
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK ++ RLG  G A+  ++   +G L LD+ALG GGLP+GR++EI+GPESSGKTTL L  IAE+QK GG    +DAEHA D SY++ L
Sbjct:   11 EKAKALQAALAQIEKQFGKGTIMRLGE-GEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKL 114

HSP 2 Score: 37.3502 bits (85), Expect = 4.624e-27
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++  +++   D GE ALEI D + RSGA+D+
Sbjct:  115 GVNLNEVLISQPDTGEQALEIVDSLVRSGAVDM 147
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_METPP (Protein recA OS=Methylibium petroleiphilum (strain PM1) GN=recA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.627e-27
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL--VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALXRGCRE 676
            ++ +AL AA+  I   FGK ++ RLG  G  +  +E   +G L LD+ALG GGLP+GR++EI+GPESSGKTTL L  IAE+QKL G    +DAEHA D  Y++ L    +E
Sbjct:   11 EKAKALQAALAQIEKQFGKGTIMRLGE-GEVIDDIEVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLAGTCAFIDAEHALDSQYAQKLGVNLQE 120

HSP 2 Score: 38.891 bits (89), Expect = 4.627e-27
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV+++ L++   D GE ALEI D + RSG++DL
Sbjct:  115 GVNLQELLISQPDTGEQALEIVDALVRSGSVDL 147
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_HERSE (Protein recA OS=Herbaspirillum seropedicae GN=recA PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 6.024e-27
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:  353 DRQRALDAAMNDINSSFGKESVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            ++ +AL AA+  I   FGK SV R+     A  ++   +G L LD+ALG GGLP+GR++EI+GPESSGKTTL L +IAE+QKLGG    +DAEHA D +Y++ L
Sbjct:   11 EKSKALAAALAQIEKQFGKGSVMRMEDGVIAEEIQAVSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKL 114

HSP 2 Score: 39.6614 bits (91), Expect = 6.024e-27
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV++ +L++   D GE ALEI D + RSGA+DL
Sbjct:  115 GVNLNDLLISQPDTGEQALEICDALVRSGAVDL 147
[Close]
BLAST of DR403425 vs. ExPASy Swiss-Prot
Match: RECA_WOLPP (Protein recA OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=recA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.841e-27
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 2 
Query:  338 DSRFLDRQRALDAAMNDINSSFGKESVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL 658
            + R  D+Q+ALD A++ I  +FGK ++ +L       ++T  +G + LD ALG GGLPKGRI+EIFGPESSGKTTLALH IAE QK GG    +DAEHA D  Y++ L
Sbjct:    6 EERNNDKQKALDNAISQIEKAFGKGAIMKLKQNPVEKIDTISTGSIALDSALGVGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVIYARKL 113

HSP 2 Score: 29.261 bits (64), Expect = 7.841e-27
Identity = 12/33 (36.36%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  660 GVDVENLIVRXXDNGEMALEIADRMCRSGAIDL 758
            GV  ++L++   D GE AL I + +  S A+D+
Sbjct:  114 GVKTDDLVISQPDTGEQALHIVEYLVCSSAVDV 146
The following BLAST results are available for this feature:
BLAST of DR403425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_BURS32.098e-2751.92Protein recA OS=Burkholderia sp. (strain 383) GN=r... [more]
RECA_DESVV2.730e-2750.00Protein recA OS=Desulfovibrio vulgaris subsp. vulg... [more]
RECA_DESVH2.730e-2750.00Protein recA OS=Desulfovibrio vulgaris (strain Hil... [more]
RECA_LARHH2.731e-2751.92Protein recA OS=Laribacter hongkongensis (strain H... [more]
RECA_CHRSD2.731e-2752.43Protein recA OS=Chromohalobacter salexigens (strai... [more]
RECA_BDEBA4.622e-2753.33Protein recA OS=Bdellovibrio bacteriovorus GN=recA... [more]
RECA_DELAS4.624e-2752.38Protein recA OS=Delftia acidovorans (strain DSM 14... [more]
RECA_METPP4.627e-2749.55Protein recA OS=Methylibium petroleiphilum (strain... [more]
RECA_HERSE6.024e-2751.92Protein recA OS=Herbaspirillum seropedicae GN=recA... [more]
RECA_WOLPP7.841e-2753.70Protein recA OS=Wolbachia pipientis subsp. Culex p... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403425 ID=DR403425; Name=DR403425; organism=Citrus sinensis; type=EST; length=786bp
GGGGGACCCACTTTGCTTCTGCTTCTGCTCTCTGCTTCTGTGACTTGTGT
CTCCTCGTGTTTCGTCTATTATTTTCTTACAAATAATGGAGTCTCTCGCA
GCAGCAGCTGTGCCTCTGAAAGCAAAACTGGGTGTGTGCCATCAGCTATG
TTTCTCCCCATTCAACATGAAGACACACTTATGTCTCTTGTCAATTTCTT
CAAGTCCCCTTCATTGCCAATCTTCCCGCTCTCGGTTCTTCACAGCCTCG
TCCAAGCTGTCAGCTGCCAGAAAACGTGACAAGAAAATCAGCTGCGAATT
TGACGGAAAAGTTAATGGCTTTTCTTCCGACTCCGGAGACTCCCGCTTCC
TCGACCGGCAAAGAGCGTTGGATGCAGCAATGAATGACATAAACAGTTCA
TTTGGAAAAGAGAGTGTTACAAGATTGGGCAGTGCTGGTGGAGCCCTTGT
TGAAACCTTTCCCAGTGGTTGCTTGACGCTGGATTTGGCCTTAGGTGGTG
GGCTTCCTAAAGGGAGAATTGTGGAGATATTTGGGCCAGAAAGTAGTGGA
AAGACTACCCTTGCACTCCATGCAATTGCAGAAGTGCAGAAACTCGGAGG
CAATGCAATGCTTGTGGATGCAGAGCATGCTTTTGATCCATCATATTCAA
AAGCATTGNGGCGTGGATGTAGAGAATTTGATTGTTCGCCANNNTGATAA
CGGCGAGATGGCACTAGAAATTGCCGATCGTATGTGCAGATCTGGTGCCA
TAGATCTTTATTTGTGTTGACTCTGTATCAGCTCTC
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