DR403414

Overview
NameDR403414
Unique NameDR403414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_COCIM (ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis GN=SPB4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = -1
Query:   53 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 268
            L P LSE +L+A+A  GF   TPVQA+TIPL   +KDV V+A TGSGKT+AF++P+VE L R  +  K H V
Sbjct:   20 LTPPLSEWILDAVAAMGFTRMTPVQASTIPLFMGHKDVVVEAVTGSGKTMAFLIPVVEKLLRLEAPIKKHHV 91          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_BOTFB (ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain B05.10) GN=spb4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = -1
Query:   53 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 268
            L P+L+E VL+A++  GFE  TPVQA+TIPL    KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:   17 LTPSLAEWVLDAISSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHV 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPFU (ATP-dependent rRNA helicase spb4 OS=Aspergillus fumigatus GN=spb4 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + PALSE VLEA++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:    1 MAPKPPSGTSLRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHV 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_MOUSE (ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:   53 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 292
            +TE  +  L+  L   VL AL E GF   TPVQ+ATIPL    KDVA +A TGSGKTLAFV+P++EIL R     K +QV
Sbjct:    4 VTEGAWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQV 83          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_HUMAN (ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   53 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 292
            +TE  +  L   L   VL AL E GF + TPVQ+ATIPL    KDVA +A TGSGKTLAFV+P++EIL R     K  QV
Sbjct:    4 VTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQV 83          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPTN (ATP-dependent rRNA helicase spb4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=spb4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.617e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + P+LSE VL+A+A  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F+VP+VE L R     K H +
Sbjct:    1 MAPKPPAGTSSRAWEAVSPSLSEWVLDAVASWGFSKMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLVPVVEKLLRLEEPIKKHHI 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_SCLS1 (ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = -1
Query:   53 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 268
            L P+L+E +L+A+   GFE  TPVQA+TIPL    KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:   17 LTPSLAEWILDAIKSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHV 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_GIBZE (ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae GN=SPB4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   44 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQVQNI 268
            L P LSE + +A+A  GF+  TPVQAAT+P     KDV V+A TGSGKTLAF++PLV+ L R S   K H V  I
Sbjct:   17 LNPPLSEWIRDAVATMGFDQMTPVQAATLPHFMGNKDVVVEAVTGSGKTLAFLIPLVQKLLRLSEPTKKHHVAAI 91          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_EMENI (ATP-dependent rRNA helicase spb4 OS=Emericella nidulans GN=spb4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = -1
Query:   53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316
            M   P    +   +  + P LSE VL+A++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H V
Sbjct:    1 MAPKPPSGTSSRAWDAVNPPLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHV 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_BOVIN (ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:   53 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 292
            +TE  +  L   L   VL  L E GF + TPVQ+ATIPL    KDVA +A TGSGKTLAFV+P+ EIL R     K  QV
Sbjct:    4 VTEGSWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQV 83          
The following BLAST results are available for this feature:
BLAST of DR403414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SPB4_COCIM2.004e-1455.56ATP-dependent rRNA helicase SPB4 OS=Coccidioides i... [more]
SPB4_BOTFB2.004e-1455.56ATP-dependent rRNA helicase spb4 OS=Botryotinia fu... [more]
SPB4_ASPFU2.004e-1447.73ATP-dependent rRNA helicase spb4 OS=Aspergillus fu... [more]
DDX55_MOUSE2.004e-1453.75ATP-dependent RNA helicase DDX55 OS=Mus musculus G... [more]
DDX55_HUMAN2.004e-1453.75ATP-dependent RNA helicase DDX55 OS=Homo sapiens G... [more]
SPB4_ASPTN2.617e-1446.59ATP-dependent rRNA helicase spb4 OS=Aspergillus te... [more]
SPB4_SCLS15.830e-1454.17ATP-dependent rRNA helicase spb4 OS=Sclerotinia sc... [more]
SPB4_GIBZE5.830e-1454.67ATP-dependent rRNA helicase SPB4 OS=Gibberella zea... [more]
SPB4_EMENI7.614e-1445.45ATP-dependent rRNA helicase spb4 OS=Emericella nid... [more]
DDX55_BOVIN7.614e-1452.50ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403414 ID=DR403414; Name=DR403414; organism=Citrus sinensis; type=EST; length=589bp
GGGATTTTCCTGAAGCTTCTAGGCAGCCAAACACAAATGAGAAAATGTTT
TGGACCTGGTGGGGTTTCCGAGCAGAAGAGGCACGGCGGAGGATCTCCAC
TAGAGGGACGACAAAAGCTAGGGTTTTGCCAGAGCCGGTGGCGGCGTCCA
CGGCTACGTCCTTGTAGCTGCATAACAAAGGGATTGTGGCAGCTTGAACA
GGCGTGCAAAACTCAAAGCCGGCTTCAGCTAAGGCTTCGAGAACTGGCTC
GGAAAGCGCCGGCTTCAAATCGGAAAAGCGAGTTTCTGTTAACGCTCTGT
TCGGGTTGGACTCCATTCTAACGGTTCAAGGCAAGCGCGGATTCGGAGTC
AGATAGCATCCATTGATACCTACTGAAAACATATCAAATCAGTCCCTTAA
TTTTATATTTATTTCTCGATGAAAAACAAAGGCTTCGGTAGACAGTGGAG
TTGTTCTACTGTAGAGAACTGACGGTGATCCTTACGTTATAGTAATAAGT
GTAGATTTAATATTTATTTTTATGATCGTACGGTTATCAACAATATTTTG
CCATTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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