DR403414

Overview
NameDR403414
Unique NameDR403414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_DANRE (ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:   53 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 292
            +T+ ++  L   L + +L+ L E GF + TPVQ+A IPL  S KDVA +A TGSGKTLAFV+P +EIL +     K  QV
Sbjct:    4 ITDGKWGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQV 83          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_USTMA (ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis GN=SPB4 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -1
Query:   53 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 277
            ++ L P L+  V+  L++ GF   TPVQA+TIPL  S+KDV V+A TGSGKTLAFV+P++E+L R ++  K  +V
Sbjct:   28 WTKLTPPLTPWVVSLLSDLGFGQMTPVQASTIPLFVSHKDVVVEAVTGSGKTLAFVIPVLEMLARRTTRLKKDEV 102          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_PHANO (ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = -1
Query:   53 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 277
            FS L PALSE +++A+   GF   TPVQ A IP+     DV V+A TGSGKTLAF++P+VE L R  +  K H V
Sbjct:   11 FSALTPALSEWIIDAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAFLIPIVERLLREDAPTKKHHV 85          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_DROME (Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila melanogaster GN=CG9630 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = -1
Query:   83 LTETRFSDL-KPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR 292
            ++  ++S L KP LS+ VL+ +   GF+  TPVQ A IPLL + KDV+ +A TGSGKTLAF+VP++EIL+R
Sbjct:    1 MSRKKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQR 71          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RHLB_IDILO (ATP-dependent RNA helicase rhlB OS=Idiomarina loihiensis GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   65 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARK 292
            LTETRF+DL  AL   + +A++ AGFE+CTP+QA ++P+  S +DVA  A TG+GKTLAF++     L +  S+ K
Sbjct:    6 LTETRFADL--ALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNESSEK 79          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_XENLA (ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = -1
Query:   53 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 292
            +TE  +  L   L+  +   L E  F   TPVQ+ATIPL  + KD+A +A TGSGKTLAFV+PL+EIL +     K +QV
Sbjct:    4 VTEGTWDSLPQKLNGSIRRTLEELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKKNQV 83          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_CHAGB (ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:   44 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQVQNI 289
            T   +  L P+L+  +L+ L+  GFE  TPVQ +   +    KDV V+A TGSGKTLAF++P+VE L R+    K H VQ I
Sbjct:   11 TPRSWGALTPSLAPWILDYLSSMGFEQPTPVQKSCFDIFRGNKDVVVEAVTGSGKTLAFLIPVVERLLRSEDPAKRHHVQAI 92          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_DICDI (Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium discoideum GN=ddx55 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = -1
Query:   65 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARK 277
            ++ L+  LS+  L  +   GF+  +PVQ+A IPL  S KDV V+A TGSGKTLAFV+P++E IL+R ++ +K
Sbjct:   10 WNKLENKLSDSTLNTINRLGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRETNLKK 81          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVY (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus (strain YJ016) GN=rhlB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = -1
Query:   44 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQVQNI 292
            +TE +F+DL   L+  V+E L + GFEFCTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A   R+P Q + I
Sbjct:    6 ITEQKFADL--GLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAI 88          
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RHLB_SHELP (ATP-dependent RNA helicase rhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  107 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVV 292
            LT  +F+D   +L   + +AL E+GFE+CTP+QA ++P+L  +KD+A  A TG+GKTLAF+V
Sbjct:    6 LTNQKFADF--SLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLV 65          
The following BLAST results are available for this feature:
BLAST of DR403414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DDX55_DANRE9.944e-1448.75ATP-dependent RNA helicase DDX55 OS=Danio rerio GN... [more]
SPB4_USTMA2.215e-1350.67ATP-dependent rRNA helicase SPB4 OS=Ustilago maydi... [more]
SPB4_PHANO2.893e-1352.00ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria ... [more]
DDX55_DROME3.779e-1353.52Probable ATP-dependent RNA helicase DDX55 homolog ... [more]
RHLB_IDILO1.875e-1248.68ATP-dependent RNA helicase rhlB OS=Idiomarina loih... [more]
DDX55_XENLA2.449e-1247.50ATP-dependent RNA helicase DDX55 OS=Xenopus laevis... [more]
SPB4_CHAGB2.708e-1145.12ATP-dependent rRNA helicase SPB4 OS=Chaetomium glo... [more]
DDX55_DICDI2.708e-1148.61Probable ATP-dependent RNA helicase ddx55 OS=Dicty... [more]
RHLB_VIBVY6.033e-1143.53ATP-dependent RNA helicase rhlB OS=Vibrio vulnific... [more]
RHLB_SHELP6.033e-1150.00ATP-dependent RNA helicase rhlB OS=Shewanella loih... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403414 ID=DR403414; Name=DR403414; organism=Citrus sinensis; type=EST; length=589bp
GGGATTTTCCTGAAGCTTCTAGGCAGCCAAACACAAATGAGAAAATGTTT
TGGACCTGGTGGGGTTTCCGAGCAGAAGAGGCACGGCGGAGGATCTCCAC
TAGAGGGACGACAAAAGCTAGGGTTTTGCCAGAGCCGGTGGCGGCGTCCA
CGGCTACGTCCTTGTAGCTGCATAACAAAGGGATTGTGGCAGCTTGAACA
GGCGTGCAAAACTCAAAGCCGGCTTCAGCTAAGGCTTCGAGAACTGGCTC
GGAAAGCGCCGGCTTCAAATCGGAAAAGCGAGTTTCTGTTAACGCTCTGT
TCGGGTTGGACTCCATTCTAACGGTTCAAGGCAAGCGCGGATTCGGAGTC
AGATAGCATCCATTGATACCTACTGAAAACATATCAAATCAGTCCCTTAA
TTTTATATTTATTTCTCGATGAAAAACAAAGGCTTCGGTAGACAGTGGAG
TTGTTCTACTGTAGAGAACTGACGGTGATCCTTACGTTATAGTAATAAGT
GTAGATTTAATATTTATTTTTATGATCGTACGGTTATCAACAATATTTTG
CCATTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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