DR403404

Overview
NameDR403404
Unique NameDR403404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_BACSK (S-adenosylmethionine synthetase OS=Bacillus clausii (strain KSM-K16) GN=metK PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.648e-59
Identity = 114/206 (55.34%), Postives = 149/206 (72.33%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMPL + L+ KL  RLTEVRKN T  +LRPDGKTQVT+EY        P RV T+++STQH   VT EQI  DLKEHVI+ V+P+  +DE T + +NP+GRFVIGGP GDAGLTGRKII+DTY             KD+TKVDRS AY  R  AK++VA+GLA +C VQ++YAIGV +P+S+ V+T+GTGK ++  ++ L++++F
Sbjct:  148 ELMPLPISLSHKLSRRLTEVRKNGTLGYLRPDGKTQVTIEYDEND---TPVRVDTIVLSTQHAPEVTLEQIQADLKEHVIEAVVPSALIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAQPVSIAVNTFGTGKAAEDVLVELVRKHF 350          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOPH (S-adenosylmethionine synthetase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=metK PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.130e-58
Identity = 110/206 (53.40%), Postives = 153/206 (74.27%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMP  + LA KL  +L++VRK+ T  +LRPDGK+QVTVEY  EG    P  ++ V++STQHD  VT+EQI ED+K++V +PV+P   +DE+T F +NP+GRFVIGGP+GD+GLTGRKII+DTY             KD TKVDRSA+Y  R  AK++VASGLA +C +Q+SYAIGV +P S+ +DT+GTGK S++++  +++++F
Sbjct:  145 ELMPYPISLAHKLTKQLSKVRKDGTLSYLRPDGKSQVTVEYNEEGK---PVHLNAVVLSTQHDPDVTQEQIHEDIKKYVFEPVLPKEMVDEKTKFFINPTGRFVIGGPNGDSGLTGRKIIVDTYGGYARHGGGAFSGKDCTKVDRSASYAARYVAKNIVASGLADKCEIQLSYAIGVAQPTSIMIDTFGTGKKSNEELTEIVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_BACA2 (S-adenosylmethionine synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=metK PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.475e-58
Identity = 112/206 (54.37%), Postives = 145/206 (70.39%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMPL + LA KL  RL+EVRK    P+LRPDGKTQVTVEY        P R+  ++ISTQH   +T EQI  +LKEHVI PV+P   +DE T + +NP+GRFVIGGP GDAGLTGRKII+DTY             KD+TKVDRSAAY  R  AK++VA+GLA  C VQ++YAIGV +P+S+ ++T+ TGK S++ ++ +++ NF
Sbjct:  146 ELMPLPISLAHKLARRLSEVRKEDILPYLRPDGKTQVTVEYDENNK---PVRIDAIVISTQHHPEITLEQIQRNLKEHVINPVVPEELIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADSCEVQLAYAIGVAQPVSISINTFDTGKASEEKLIEVVRNNF 348          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.927e-58
Identity = 119/207 (57.49%), Postives = 147/207 (71.01%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMP+ + LA KL  RL++VRKN T  +LRPDGK+QVTVEY  +     P RV TVLISTQH   V  + I  D+ EHVIKPVIPA  LD +T + +NP+GRFVIGGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLAR+C VQ++YAIGV  P+SV VDT+GTG I ++ I +L+ + F
Sbjct:  143 PELMPMPISLAHKLAMRLSQVRKNGTLNYLRPDGKSQVTVEYDGDK----PVRVDTVLISTQHGPEVDYDTIKRDVIEHVIKPVIPAELLDSKTKYLVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARKCEVQLAYAIGVARPVSVRVDTFGTGIIPEEKIESLVNKYF 345          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.927e-58
Identity = 111/206 (53.88%), Postives = 150/206 (72.82%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY N      P R+  ++ISTQH   V  EQI +D+KEHVIK ++P+  LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+GTGKI+D++I++++ + F
Sbjct:  141 EYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKITDEEIVSIVNKVF 342          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.516e-58
Identity = 112/207 (54.11%), Postives = 148/207 (71.50%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA +L  RL +VRKN T P+LRPDGKTQVT+EY  E G   P+R+ T++IS QHD   T+EQI +D+ ++VI  V+  + +D+RT + +NP+GRFV+GGP GD GLTGRKII+DTY             KD TKVDRS AY  R  AK++VA+GLAR+C VQV+YAIGV  P+S+ V T+GTGK+ D+ +  L++E F
Sbjct:  145 PELMPLPISLAHRLARRLAQVRKNGTLPYLRPDGKTQVTIEY--EDGR--PKRIDTIVISAQHDPDTTQEQIRKDVIDYVILDVVDRNLIDDRTRYFINPTGRFVVGGPQGDTGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARWVAKNIVAAGLARKCEVQVAYAIGVAHPVSILVTTFGTGKLPDERLAQLVRETF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOTE (S-adenosylmethionine synthetase OS=Clostridium tetani GN=metK PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.516e-58
Identity = 111/206 (53.88%), Postives = 148/206 (71.84%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY +        R+ T+++STQH   VT+EQI +D+ EHVI  V+P  FLDE T +++NP+GRFV+GGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  VQ++YAIG+ +P+S+ V+T+GTGKI D+ I+ +I + F
Sbjct:  141 EYMPMAISIAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEDNKAI----RIDTIVVSTQHGPEVTREQIEKDIFEHVISKVVPVEFLDENTNYYINPTGRFVVGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEVQLAYAIGIAKPVSISVETFGTGKIDDRKIVEIINKVF 342          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_ALKOO (S-adenosylmethionine synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=metK PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.286e-58
Identity = 113/207 (54.59%), Postives = 148/207 (71.50%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA KL  RL++VRK+ T  +LRPDGKTQVTVEY  +     P RV T++ISTQH   V    I +D+ EHV++ ++PA  LDE T + +NP+GRFVIGGP GDAGLTGRKII+DTY             KD+TKVDRSAAY  R  AK++VA+GLA +C ++++YAIGV  P+S+ V+T+GTGKI++ DI  LI ++F
Sbjct:  142 PELMPLPISLAHKLAKRLSDVRKDGTIGYLRPDGKTQVTVEYDGDK----PVRVDTIVISTQHGPEVDAATIEKDMIEHVVQKIVPAELLDENTRYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDATKVDRSAAYAARYVAKNIVAAGLADKCEIELAYAIGVSRPISILVETFGTGKIAEADIAELIGKHF 344          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOBL (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=metK PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 110/206 (53.40%), Postives = 150/206 (72.82%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY N      P R+  ++ISTQH   V  EQI +D+KEHVIK ++P+  LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+GTGK++D++I++++ + F
Sbjct:  141 EYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKMTDEEIVSIVNKVF 342          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOBK (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=metK PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 110/206 (53.40%), Postives = 150/206 (72.82%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY N      P R+  ++ISTQH   V  EQI +D+KEHVIK ++P+  LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+GTGK++D++I++++ + F
Sbjct:  141 EYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKMTDEEIVSIVNKVF 342          
The following BLAST results are available for this feature:
BLAST of DR403404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BACSK8.648e-5955.34S-adenosylmethionine synthetase OS=Bacillus clausi... [more]
METK_CLOPH1.130e-5853.40S-adenosylmethionine synthetase OS=Clostridium phy... [more]
METK_BACA21.475e-5854.37S-adenosylmethionine synthetase OS=Bacillus amylol... [more]
METK_CLOTH1.927e-5857.49S-adenosylmethionine synthetase OS=Clostridium the... [more]
METK_CLOBM1.927e-5853.88S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_SYMTH2.516e-5854.11S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK_CLOTE2.516e-5853.88S-adenosylmethionine synthetase OS=Clostridium tet... [more]
METK_ALKOO3.286e-5854.59S-adenosylmethionine synthetase OS=Alkaliphilus or... [more]
METK_CLOBL4.292e-5853.40S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBK4.292e-5853.40S-adenosylmethionine synthetase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403404 ID=DR403404; Name=DR403404; organism=Citrus sinensis; type=EST; length=624bp
ACCTGAGCTAATGCCGCTGACTCTCGTTCTTGCCACCAAGCTTGGAGCCA
GACTTACTGAGGTGAGAAAGAATAAGACATGCCCCTGGCTGAGGCCGGAT
GGAAAAACCCAGGTGACTGTTGAGTACCGGAACGAAGGTGGAGCCATGGT
CCCACAGAGGGTCCACACTGTTCTCATTTCAACCCAGCACGATGAAACTG
TCACCAAGGAGCAGATTTCTGAGGACCTGAAGGAGCATGTGATTAAACCA
GTCATTCCGGCACATTTCCTTGATGAAAGGACAATCTTCCACCTCAACCC
CTCTGGTCGTTTTGTCATTGGCGGGCCACATGGGGATGCAGGGCTTACCG
GTAGGAAGATCATCATTGATACTTATGGTGGTTGGGGTGCTCATGGTGGC
GGTGCCTTCTCTGGCAAGGATTCTACAAAGGTCGATCGAAGTGCTGCATA
TATTGTCAGGCAGGCTGCAAAGAGTGTGGTGGCTTCTGGGCTTGCCCGTC
GCTGTCTTGTCCAGGTCTCTTATGCCATTGGTGTGCCAGAACCGCTGTCT
GTGTTTGTGGACACTTATGGTACAGGAAAGATTTCAGATAAGGATATACT
GGCTCTAATTAAGGAGAACTTTGA
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