DR403404

Overview
NameDR403404
Unique NameDR403404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOBH (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 110/206 (53.40%), Postives = 150/206 (72.82%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY N      P R+  ++ISTQH   V  EQI +D+KEHVIK ++P+  LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+GTGK++D++I++++ + F
Sbjct:  141 EYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKMTDEEIVSIVNKVF 342          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_CLOB1 (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 110/206 (53.40%), Postives = 150/206 (72.82%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            E MP+ + +A KL  RL+EVRKN T P+LRPDGKTQVTVEY N      P R+  ++ISTQH   V  EQI +D+KEHVIK ++P+  LDE T + +NP+GRFV+GGP GD+GLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+GTGK++D++I++++ + F
Sbjct:  141 EYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIKEHVIKVIVPSELLDENTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKLEIQLAYAIGVAKPVSISVDTFGTGKMTDEEIVSIVNKVF 342          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_THEP3 (S-adenosylmethionine synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 111/206 (53.88%), Postives = 147/206 (71.36%), Query Frame = 2
Query:    5 ELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            ELMP+ ++LA KL  RL EVRKN T  +LRPDGKTQVTVEY ++     P RV +V++S QH   +  + I  D+ EHVIKP+IP + +D++T   +NP+GRFVIGGP GD+GLTGRKII+DTY             KD TKVDRSA+Y  R  AK++VA+GLA++C VQ++YAIGV  PL + +DT+GTGKISD+ I  ++K+ F
Sbjct:  143 ELMPMPIMLAHKLARRLAEVRKNGTLSYLRPDGKTQVTVEYEDDK----PVRVDSVVVSAQHAPEIDHDTIERDIIEHVIKPIIPENMIDDKTKIFVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSASYAARYVAKNIVAAGLAKKCEVQLAYAIGVATPLEIGIDTFGTGKISDEKISEIVKQVF 344          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAW (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MW2) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAU (S-adenosylmethionine synthetase OS=Staphylococcus aureus GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGIARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAT (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAS (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain MSSA476) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAE (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain Newman) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAC (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain COL) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_STAAB (S-adenosylmethionine synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=metK PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.606e-58
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 2
Query:   11 MPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            MPL + L+ +L  RL++VRK+ T  +LRPDGK QVTVEY        P R+ T+++STQH E VT EQI ED+K HVI P +P + ++E+T F++NP+GRFVIGGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VA+GLA +C VQ++YAIGV EP+S+ +DT+GTGK+S+  ++  ++++F
Sbjct:  147 MPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDN---PVRIDTIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLADQCEVQLAYAIGVAEPVSIAIDTFGTGKVSEGQLVEAVRKHF 347          
The following BLAST results are available for this feature:
BLAST of DR403404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOBH4.292e-5853.40S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOB14.292e-5853.40S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_THEP35.606e-5853.88S-adenosylmethionine synthetase OS=Thermoanaerobac... [more]
METK_STAAW5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAU5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAT5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAS5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAE5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAC5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_STAAB5.606e-5853.43S-adenosylmethionine synthetase OS=Staphylococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403404 ID=DR403404; Name=DR403404; organism=Citrus sinensis; type=EST; length=624bp
ACCTGAGCTAATGCCGCTGACTCTCGTTCTTGCCACCAAGCTTGGAGCCA
GACTTACTGAGGTGAGAAAGAATAAGACATGCCCCTGGCTGAGGCCGGAT
GGAAAAACCCAGGTGACTGTTGAGTACCGGAACGAAGGTGGAGCCATGGT
CCCACAGAGGGTCCACACTGTTCTCATTTCAACCCAGCACGATGAAACTG
TCACCAAGGAGCAGATTTCTGAGGACCTGAAGGAGCATGTGATTAAACCA
GTCATTCCGGCACATTTCCTTGATGAAAGGACAATCTTCCACCTCAACCC
CTCTGGTCGTTTTGTCATTGGCGGGCCACATGGGGATGCAGGGCTTACCG
GTAGGAAGATCATCATTGATACTTATGGTGGTTGGGGTGCTCATGGTGGC
GGTGCCTTCTCTGGCAAGGATTCTACAAAGGTCGATCGAAGTGCTGCATA
TATTGTCAGGCAGGCTGCAAAGAGTGTGGTGGCTTCTGGGCTTGCCCGTC
GCTGTCTTGTCCAGGTCTCTTATGCCATTGGTGTGCCAGAACCGCTGTCT
GTGTTTGTGGACACTTATGGTACAGGAAAGATTTCAGATAAGGATATACT
GGCTCTAATTAAGGAGAACTTTGA
back to top