DR403404

Overview
NameDR403404
Unique NameDR403404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.522e-50
Identity = 101/205 (49.27%), Postives = 137/205 (66.83%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R   VRK+   PWLRPD K+QVTV Y ++     P  + TV++STQH   ++   + E ++E +IKPV+P   + + T + +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRS++Y  R  AK++VA+GLARRC VQV+YAIGV +P+S+ VDT+GTG I D  I AL++E+F
Sbjct:  137 LMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDTKYLINPTGRFVIGGPVGDCGLTGRKIIVDTYGGQGSHGGGAFSGKDPSKVDRSSSYAGRYVAKNIVAAGLARRCEVQVAYAIGVSQPVSLMVDTFGTGVIDDDRIAALVQEHF 337          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_VIBCM (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 99/205 (48.29%), Postives = 139/205 (67.80%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R  EVRKN T PWLRPD K+QVT +Y  + G +V   +  V++STQH ++++   + E + E +IKPV+PA +L + T + +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK++VA+G+A RC +Q+SYAIGV +P S+ V+T+GT K+S + I+  +++ F
Sbjct:  135 LMPAPITYAHRLMQRQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKIVG--IDAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEKVSQEIIIEAVRQFF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_VIBC3 (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 99/205 (48.29%), Postives = 139/205 (67.80%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  A +L  R  EVRKN T PWLRPD K+QVT +Y  + G +V   +  V++STQH ++++   + E + E +IKPV+PA +L + T + +NP+GRFVIGGP GD GLTGRKII+DTY             KD +KVDRSAAY  R  AK++VA+G+A RC +Q+SYAIGV +P S+ V+T+GT K+S + I+  +++ F
Sbjct:  135 LMPAPITYAHRLMQRQAEVRKNGTLPWLRPDAKSQVTFQY--DQGKIVG--IDAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEKVSQEIIIEAVRQFF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_THET8 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 104/208 (50.00%), Postives = 136/208 (65.38%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFL-DERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA +L  RL EVRK    P+LRPDGK QVTV Y  +     P  V TV++S QH   V +EQ+ EDL   V++  IP  +L D  T + +NPSGRF++GGPH D GLTGRKII+DTY             KD TKVDRSA+Y  R  AK++VA+GLARR LV+++YAIG   P+S+ V+T+GTG + D+ +  + K+ F
Sbjct:  143 PELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKDGETEYLINPSGRFILGGPHADTGLTGRKIIVDTYGGAVPHGGGAFSGKDPTKVDRSASYYARYMAKNIVAAGLARRALVELAYAIGKARPVSLRVETFGTGVLPDEKLTEIAKKVF 346          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_THET2 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=metK PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 104/208 (50.00%), Postives = 136/208 (65.38%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFL-DERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA +L  RL EVRK    P+LRPDGK QVTV Y  +     P  V TV++S QH   V +EQ+ EDL   V++  IP  +L D  T + +NPSGRF++GGPH D GLTGRKII+DTY             KD TKVDRSA+Y  R  AK++VA+GLARR LV+++YAIG   P+S+ V+T+GTG + D+ +  + K+ F
Sbjct:  143 PELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKDGETEYLINPSGRFILGGPHADTGLTGRKIIVDTYGGAVPHGGGAFSGKDPTKVDRSASYYARYMAKNIVAAGLARRALVELAYAIGKARPVSLRVETFGTGVLPDEKLTEIAKKVF 346          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_SYNS9 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9902) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 110/218 (50.46%), Postives = 145/218 (66.51%), Query Frame = 2
Query:    2 PELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQH--------DETVTKEQISEDLKEHVIKPVIPAHFLD---ERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            PELMPL + LA +L  +L EVR N T  +L PDGKTQV+V Y N+     P  + T+LISTQH        DE   +E+I+EDL  HV++P      L    E T + +NP+G+FV+GGP GDAGLTGRKII+DTY             KD TKVDRSAAY  R  AK++VASGLA R  VQ+SYAIGV +P+S+ V+++GTG +S++D+ AL++E+F
Sbjct:  139 PELMPLPISLAHRLARQLAEVRHNGTLDYLLPDGKTQVSVVYENDQ----PVAIDTILISTQHTAEVGGMSDEQGIRERITEDLWTHVVEPATADLNLKPSREGTKYLVNPTGKFVVGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARFVAKALVASGLAGRAEVQLSYAIGVAKPVSILVESFGTGTVSNEDLTALVQEHF 352          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_PSEAE (S-adenosylmethionine synthetase OS=Pseudomonas aeruginosa GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  + +L  R  E RK+   PWLRPD K+QVT  Y  EGG +V   +  V++STQH+  V+   + + + E +IK V+PA  L + T FH+NP+G FVIGGP GD GLTGRKII+D+Y             KD +KVDRSAAY  R  AK++VA+GLA RC +QVSYAIGV +P S+ ++T+GTGK+SD+ I+ L++E+F
Sbjct:  135 LMPAPICFSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--EGGKVVG--IDAVVLSTQHNPEVSYNDLRDGVMELIIKQVLPAELLHKDTQFHINPTGNFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDEKIVQLVREHF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_PSEAB (S-adenosylmethionine synthetase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  + +L  R  E RK+   PWLRPD K+QVT  Y  EGG +V   +  V++STQH+  V+   + + + E +IK V+PA  L + T FH+NP+G FVIGGP GD GLTGRKII+D+Y             KD +KVDRSAAY  R  AK++VA+GLA RC +QVSYAIGV +P S+ ++T+GTGK+SD+ I+ L++E+F
Sbjct:  135 LMPAPICFSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--EGGKVVG--IDAVVLSTQHNPEVSYNDLRDGVMELIIKQVLPAELLHKDTQFHINPTGNFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDEKIVQLVREHF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_PSEA8 (S-adenosylmethionine synthetase OS=Pseudomonas aeruginosa (strain LESB58) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  + +L  R  E RK+   PWLRPD K+QVT  Y  EGG +V   +  V++STQH+  V+   + + + E +IK V+PA  L + T FH+NP+G FVIGGP GD GLTGRKII+D+Y             KD +KVDRSAAY  R  AK++VA+GLA RC +QVSYAIGV +P S+ ++T+GTGK+SD+ I+ L++E+F
Sbjct:  135 LMPAPICFSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--EGGKVVG--IDAVVLSTQHNPEVSYNDLRDGVMELIIKQVLPAELLHKDTQFHINPTGNFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDEKIVQLVREHF 335          
BLAST of DR403404 vs. ExPASy Swiss-Prot
Match: METK_PSEA7 (S-adenosylmethionine synthetase OS=Pseudomonas aeruginosa (strain PA7) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.294e-50
Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 2
Query:    8 LMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENF 622
            LMP  +  + +L  R  E RK+   PWLRPD K+QVT  Y  EGG +V   +  V++STQH+  V+   + + + E +IK V+PA  L + T FH+NP+G FVIGGP GD GLTGRKII+D+Y             KD +KVDRSAAY  R  AK++VA+GLA RC +QVSYAIGV +P S+ ++T+GTGK+SD+ I+ L++E+F
Sbjct:  135 LMPAPICFSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--EGGKVVG--IDAVVLSTQHNPEVSYNDLRDGVMELIIKQVLPAELLHKDTQFHINPTGNFVIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDEKIVQLVREHF 335          
The following BLAST results are available for this feature:
BLAST of DR403404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACIF22.522e-5049.27S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_VIBCM3.294e-5048.29S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_VIBC33.294e-5048.29S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_THET83.294e-5050.00S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_THET23.294e-5050.00S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_SYNS93.294e-5050.46S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSEAE3.294e-5049.27S-adenosylmethionine synthetase OS=Pseudomonas aer... [more]
METK_PSEAB3.294e-5049.27S-adenosylmethionine synthetase OS=Pseudomonas aer... [more]
METK_PSEA83.294e-5049.27S-adenosylmethionine synthetase OS=Pseudomonas aer... [more]
METK_PSEA73.294e-5049.27S-adenosylmethionine synthetase OS=Pseudomonas aer... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403404 ID=DR403404; Name=DR403404; organism=Citrus sinensis; type=EST; length=624bp
ACCTGAGCTAATGCCGCTGACTCTCGTTCTTGCCACCAAGCTTGGAGCCA
GACTTACTGAGGTGAGAAAGAATAAGACATGCCCCTGGCTGAGGCCGGAT
GGAAAAACCCAGGTGACTGTTGAGTACCGGAACGAAGGTGGAGCCATGGT
CCCACAGAGGGTCCACACTGTTCTCATTTCAACCCAGCACGATGAAACTG
TCACCAAGGAGCAGATTTCTGAGGACCTGAAGGAGCATGTGATTAAACCA
GTCATTCCGGCACATTTCCTTGATGAAAGGACAATCTTCCACCTCAACCC
CTCTGGTCGTTTTGTCATTGGCGGGCCACATGGGGATGCAGGGCTTACCG
GTAGGAAGATCATCATTGATACTTATGGTGGTTGGGGTGCTCATGGTGGC
GGTGCCTTCTCTGGCAAGGATTCTACAAAGGTCGATCGAAGTGCTGCATA
TATTGTCAGGCAGGCTGCAAAGAGTGTGGTGGCTTCTGGGCTTGCCCGTC
GCTGTCTTGTCCAGGTCTCTTATGCCATTGGTGTGCCAGAACCGCTGTCT
GTGTTTGTGGACACTTATGGTACAGGAAAGATTTCAGATAAGGATATACT
GGCTCTAATTAAGGAGAACTTTGA
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