DR403403

Overview
NameDR403403
Unique NameDR403403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6089 contig Csv1_Contig6089:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.076e-14
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  516 DKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            +K +AL  K+ AI +IL    IGV  P+  + I  L P+ N F ++K F++G+IL TGF+HVLPD+FE L+S CL +
Sbjct:   39 NKAKALPLKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSD 115
The following BLAST results are available for this feature:
BLAST of DR403403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IRT2_ARATH9.076e-1446.75Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403403 ID=DR403403; Name=DR403403; organism=Citrus sinensis; type=EST; length=748bp
GGGGCTAATAATTACCATAATTTTACAAAACAAGAAACAACCCATGTACA
GAAGTTTGATTCTACTCGTAACTTGATTCTTACGGAATCGTGTCCTCATT
ATTTCTTCAAAGCTACTTTTGAGATGATCATCGAACGCTAAAGCGAATTA
AACCTTAATTGGTACTTAGCGTTTTAATCCAATCTCTTCTGTTTGTTCTA
TTAATTTCTTTTATTTTGTTTTCTTATTCTCTTTCAGTTTCACTCGATGG
GGTCGGTGCATGGGTCACAATGATTTTATGATGCTCTAGAGATCAACAAT
CACGCGCTTTCACATAAACTCTACGCTATAAACAATTTCCTCTCAAATAT
TTTCATCATACAAAAATAAAAATCGTGATATTGTTTTCAGATTTCAGATT
CTTTATCATGATCACTTCTCATCGTCTTTTCATCACTTTCTTTTGCATTC
TTCTAATACTACTTCCCAACGTAGTACGAGGAGAATGCACGTGCGATCCT
GAAGACGAGGATCGAGACAAGACTCAAGCCTTAAAATATAAACTCGCCGC
AATCGCGTCGATACTCGTGGCCGGAGCCATCGGAGTTTTACTTCCCGTCC
TCGGAAAAACTATCCGGGCACTAAGTCCGGAGAGAAATATTTTCTTCCTA
ATCAAGGCCTTTGCCGCCGGAGTTATATTATCGACGGGGTTCATCCACGT
GCTTCCCGACGCCTTCGAGAACTTAACGTCGCCCTGCCTCGATGAACA
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