DR403398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17 Identity = 52/204 (25.49%), Postives = 97/204 (47.55%), Query Frame = 2 Query: 101 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILS-RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 706 ++ NG + I G D AAD R+ Y L+ + +I +L+ C++ +G Q DV + + + +Y Q ++++ A +++S+ LY RF PY+ ++ G + +GK + D +G + + G+ S ++ + +K +SE E + L++ SAT RD Y+G +VVL +DG Sbjct: 5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVK-------------PDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVLRRDG 195
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15 Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 472 NGG+CVA+AG + A+D R+ L+ ++ K+ + DK + +G DV+ L +L + +Y+ + +Q+ L+S+TLY KRF PY+SF V+ G+ N+ + +D++G Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15 Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 715 G T V + D V A + R + G I S+ KI ++AD+ M ++G D + L +++ +Y+ + ++ + A+ L SN L R+FPY ++GG+D+EGK +Y+ D + G+ E + GSGS L +D TP + EAV+L SA +RD +GD +++V + +D ++ Sbjct: 11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVL--------------EDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 198
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15 Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 2 Query: 95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481 S ++ NG VA+ G + A+D R+ ++ D+ +I K+ DK + SG DV+ L + A RH +YQ + + M L+S LY KRF PY+ V+ GL + K + T D++G+ E Sbjct: 2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14 Identity = 56/197 (28.43%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 703 G T V I D V A + R S G I + KI K+ + +G AD ++L K L A +Y+ ++++++S A L +N L+ RF+P+ +LGG+D G +Y+ D G + S GSGS + L+++ L EAVD+ SA ERD Y+G+ + + + ++ Sbjct: 9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD-------------ELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEE 191
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14 Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 709 G T V + D + A D R S G + ++ K+ K+ D M +G D +A+ +LL A +Y+ + + + A LLSN L+ R FP+ + ++GG D +++ D +G E +++ GSGS + L+ +S E + L SA ERD ++G+ + + V+ KDG+ Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD-------------RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV 192
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14 Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 2 Query: 95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481 S ++ NG VA+ G + A+D R+ ++ D+ +I K+ D+ + SG DV+ L + L RH +YQ + + M L+S LY KRF PY V+ GL ++ K + T D++G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14 Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2 Query: 95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481 S ++ NG VA+ G + A+D R+ ++ D+ ++ K+ DK + SG D + L + L RH +YQ + + M L+S LY KRF PY+ V+ GL + + + T D +G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14 Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 2 Query: 110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 430 NGG C+ + G + A+D R +S D+ K+ ++ DKC + SG D + L + L RH +Y+ + + MS + LL+N LY KRF PY++ ++ GL+ Sbjct: 7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13 Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 2 Query: 95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481 S ++ NG VA+ G + A+D R+ ++ D+ +I K+ D + SG DV+ L + L RH +YQ + + M L+S LY KRF P+ V+ GL ++ K + T D++G+ E Sbjct: 2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130 The following BLAST results are available for this feature:
BLAST of DR403398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403398 ID=DR403398; Name=DR403398; organism=Citrus sinensis; type=EST; length=727bpback to top |