DR403398

Overview
NameDR403398
Unique NameDR403398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:81..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17
Identity = 52/204 (25.49%), Postives = 97/204 (47.55%), Query Frame = 2
Query:  101 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILS-RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 706
            ++ NG   + I G D    AAD R+   Y  L+  +  +I +L+  C++  +G Q DV    + +  +  +Y  Q ++++   A  +++S+ LY  RF PY+   ++ G + +GK  +   D +G  +    +   G+ S  ++   +  +K               +SE E + L++    SAT RD Y+G    +VVL +DG
Sbjct:    5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVK-------------PDMSEDEILPLMEQIIRSATNRDAYSGWGAHVVVLRRDG 195          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 472
            NGG+CVA+AG +    A+D R+      L+ ++ K+  + DK  +  +G   DV+ L +L   +  +Y+ +  +Q+       L+S+TLY KRF PY+SF V+ G+ N+    +  +D++G
Sbjct:    7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 715
            G T V +   D  V A + R + G  I S+   KI ++AD+  M ++G   D + L +++     +Y+ +  ++ +  A+  L SN L   R+FPY    ++GG+D+EGK  +Y+ D + G+ E     + GSGS      L              +D  TP +   EAV+L      SA +RD  +GD +++V + +D  ++
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVL--------------EDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 198          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ DK  +  SG   DV+ L +  A RH +YQ +  + M       L+S  LY KRF PY+   V+ GL  + K  + T D++G+ E
Sbjct:    2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/197 (28.43%), Postives = 92/197 (46.70%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 703
            G T V I   D  V A + R S G  I  +   KI K+ +      +G  AD ++L K L A   +Y+ ++++++S  A   L +N L+  RF+P+    +LGG+D  G   +Y+ D  G      + S GSGS +    L+++                 L   EAVD+      SA ERD Y+G+ + +  + ++
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD-------------ELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEE 191          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 709
            G T V +   D  + A D R S G  +  ++  K+ K+ D   M  +G   D +A+ +LL A   +Y+ +  + +   A   LLSN L+  R FP+ +  ++GG D      +++ D +G   E   +++ GSGS +    L+                   +S  E + L      SA ERD ++G+ + + V+ KDG+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD-------------RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV 192          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ D+  +  SG   DV+ L + L  RH +YQ +  + M       L+S  LY KRF PY    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481
            S ++ NG   VA+ G +    A+D R+      ++ D+ ++ K+ DK  +  SG   D + L + L  RH +YQ +  + M       L+S  LY KRF PY+   V+ GL  + +  + T D +G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 430
            NGG C+ + G +    A+D R       +S D+ K+ ++ DKC +  SG   D + L + L  RH +Y+ +  + MS   +  LL+N LY KRF PY++  ++ GL+
Sbjct:    7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 2
Query:   95 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 481
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ D   +  SG   DV+ L + L  RH +YQ +  + M       L+S  LY KRF P+    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130          
The following BLAST results are available for this feature:
BLAST of DR403398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PSB3_GIALA8.378e-1725.49Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]
PSB3_SCHPO1.210e-1532.23Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSMB_ARCFU1.580e-1528.57Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB3_PICMA7.841e-1532.56Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSMB_METTH1.747e-1428.43Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_METJA1.747e-1426.50Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB3A_ARATH5.083e-1431.78Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3_ORYSJ8.670e-1430.23Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_DICDI8.670e-1433.64Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3B_ARATH2.523e-1331.01Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O04 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403398 ID=DR403398; Name=DR403398; organism=Citrus sinensis; type=EST; length=727bp
GGGGGAAACACTGGAAACGAACCAAATTCATATTGTCCAAATTTCAAACC
CTAATTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCA
TACGACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTG
TGTAACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCC
GCGATTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCT
TCTGGTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAG
GCATTTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAA
TGGGCCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTAC
TATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGT
CTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCC
AGGGTTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAG
TCTCCCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTC
AGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTG
AGAGGGACATATACACGGGAGACAAACTTGAAATTGTTGTCCTAAACAAA
GATGGTATTCATCGTGAATACATGGAA
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