DR403398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13 Identity = 57/203 (28.08%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 721 G T A+ D + AAD+R + G I +R K+ +L D SG AD + + LL +Y+ Q S L S Y + ++ G D + G VY+ GS + + GSGS I F D + +++ EAV+ +K A A ERD +G + +V+LNKDG+ R++ Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGL-IVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFREN-------------MTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMERKF 212
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 49/201 (24.38%), Postives = 97/201 (48.26%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 712 GGT VA+AG + A+D R+ + ++ D K+ K+ DK + +GFQ+D + + + + R +Y+ + N+ + + +++SN Y RF Y++ ++ GLD+ K + D +G + + G+G ++ +N + + P + L EA A ++ S ERD +G + + KD ++ Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWREN---MKPDE-----LFEATAQSIL-----SCLERDAASGWGAVVYTITKDKVN 195
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 53/199 (26.63%), Postives = 91/199 (45.73%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI-VVLNKDG 706 G T V I D + A + R++ I+ ++ K+ ++ M +G D + L + + A +Y+ Q M A+ LLSN L ++ PY ++GG+D V++ DA G Y+S GSGS + L++Q ++ E VDLV ++A +RD +G +++ V+ KDG Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--VFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE-------------KMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG 191
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 53/201 (26.37%), Postives = 91/201 (45.27%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 715 G + +A+ D + AD+R +TG I +R K+ ++ DK SG AD +A+ ++ +Y Q+ + A + L Y+ + ++ G D++ KG VYT GS ++ Y+ GSGST I + D + +S+ E VD +K + A + D +G + +VVL G+ R Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS--VFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-------------NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 204
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 53/204 (25.98%), Postives = 97/204 (47.55%), Query Frame = 2 Query: 113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ--MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718 G T V I D + AAD R S G+ + ++ K++ + DK + ++G AD++ + +L +++ + + K +S + L+N L ++FPY ++GG D++ + ++ D +G Y + GSGS + M L+++ L EA DL K SA +RD +TG + + ++ G H E Sbjct: 14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVL--KNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTL-------------DEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKG-HEE 199
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 56/199 (28.14%), Postives = 93/199 (46.73%), Query Frame = 2 Query: 110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 706 +G T +A + A D+R + G I S +K+I++ + SG AD + ++LLA +Y ++ +++S A +LLSN +Y R +++ G D +G G +Y D G+ S GSGST +D+ + PS LS EA +L + AT RD Y+G + + + +DG Sbjct: 71 HGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPG-LYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQ-PS------------LSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDG 255 The following BLAST results are available for this feature:
BLAST of DR403398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR403398 ID=DR403398; Name=DR403398; organism=Citrus sinensis; type=EST; length=727bpback to top |