DR403398

Overview
NameDR403398
Unique NameDR403398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:81..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 57/203 (28.08%), Postives = 88/203 (43.35%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 721
            G T  A+   D  + AAD+R + G  I +R   K+ +L D      SG  AD + +  LL     +Y+ Q     S      L S   Y  +        ++ G D +  G VY+    GS  +   +  GSGS  I  F D   +               +++ EAV+ +K   A A ERD  +G  + +V+LNKDG+ R++
Sbjct:   24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGL-IVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFREN-------------MTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMERKF 212          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 49/201 (24.38%), Postives = 97/201 (48.26%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 712
            GGT VA+AG +    A+D R+    + ++ D  K+ K+ DK  +  +GFQ+D + + + +  R  +Y+ + N+ +    + +++SN  Y  RF  Y++  ++ GLD+  K  +   D +G       + + G+G   ++   +N  +     + P +     L EA A  ++     S  ERD  +G    +  + KD ++
Sbjct:    8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWREN---MKPDE-----LFEATAQSIL-----SCLERDAASGWGAVVYTITKDKVN 195          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 53/199 (26.63%), Postives = 91/199 (45.73%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI-VVLNKDG 706
            G T V I   D  + A + R++    I+ ++  K+ ++     M  +G   D + L + + A   +Y+ Q    M   A+  LLSN L   ++ PY    ++GG+D      V++ DA G      Y+S GSGS  +   L++Q                 ++  E VDLV    ++A +RD  +G  +++ V+  KDG
Sbjct:    8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--VFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE-------------KMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG 191          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 53/201 (26.37%), Postives = 91/201 (45.27%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 715
            G + +A+   D  +  AD+R +TG  I +R   K+ ++ DK     SG  AD +A+  ++     +Y  Q+    +  A    +   L Y+      +  ++ G D++ KG VYT    GS  ++ Y+  GSGST I  + D   +               +S+ E VD +K   + A + D  +G  + +VVL   G+ R
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS--VFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-------------NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 204          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 53/204 (25.98%), Postives = 97/204 (47.55%), Query Frame = 2
Query:  113 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ--MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            G T V I   D  + AAD R S G+ + ++   K++ + DK  + ++G  AD++ +  +L  +++ + +   K   +S   +   L+N L   ++FPY    ++GG D++ +  ++  D +G      Y + GSGS + M  L+++      L              EA DL K    SA +RD +TG  + +  ++  G H E
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVL--KNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTL-------------DEAADLAKRAVFSAIKRDSFTGTGVIVAKIHSKG-HEE 199          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 56/199 (28.14%), Postives = 93/199 (46.73%), Query Frame = 2
Query:  110 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 706
            +G T +A       + A D+R + G  I S   +K+I++    +   SG  AD +  ++LLA    +Y  ++ +++S  A  +LLSN +Y  R       +++ G D +G G +Y  D  G+       S GSGST     +D+  + PS            LS  EA +L +     AT RD Y+G  + +  + +DG
Sbjct:   71 HGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPG-LYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQ-PS------------LSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDG 255          
The following BLAST results are available for this feature:
BLAST of DR403398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PSB6_SCHPO5.620e-1328.08Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB3_CAEEL2.135e-1224.38Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSMB_THEAC6.213e-1226.63Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSB6_YEAST6.213e-1226.37Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSMB_SULSO1.060e-1125.98Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB8_CANFA3.084e-1128.14Proteasome subunit beta type-8 OS=Canis familiaris... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O04 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403398 ID=DR403398; Name=DR403398; organism=Citrus sinensis; type=EST; length=727bp
GGGGGAAACACTGGAAACGAACCAAATTCATATTGTCCAAATTTCAAACC
CTAATTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCA
TACGACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTG
TGTAACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCC
GCGATTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCT
TCTGGTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAG
GCATTTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAA
TGGGCCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTAC
TATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGT
CTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCC
AGGGTTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAG
TCTCCCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTC
AGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTG
AGAGGGACATATACACGGGAGACAAACTTGAAATTGTTGTCCTAAACAAA
GATGGTATTCATCGTGAATACATGGAA
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