DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6088 contig Csv1_Contig6088:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.901e-75
Identity = 142/182 (78.02%), Postives = 158/182 (86.81%), Query Frame = 2
Query:  191 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            E DLY ++KSL+ +L+F +IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL   EKP  +Y+DIGG DIQKQE+REAVELPLTHH LYKQIGIDPPRGVLLYGPPGTGKTMLAKA
Sbjct:   22 EADLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKA 203          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.013e-75
Identity = 134/180 (74.44%), Postives = 161/180 (89.44%), Query Frame = 2
Query:  197 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D+Y +LK L+++ E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +DQN GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++EKPDVTY D+GG D+QKQEIREAVELPL   +LY+QIGIDPPRGVLLYGPPGTGKTML KA
Sbjct:   46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.425e-74
Identity = 137/196 (69.90%), Postives = 164/196 (83.67%), Query Frame = 2
Query:  149 PPPTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            PPP  +   +  SD+   Y +L +L+RQL  + + E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VDQN+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   EKPD++Y DIGG D+QKQE+REAVELPLTH ELY+QIGIDPPRGVL+YGPPG GKTMLAKA
Sbjct:   22 PPPLPATCVDVSSDD---YIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKA 214          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.130e-62
Identity = 111/179 (62.01%), Postives = 147/179 (82.12%), Query Frame = 2
Query:  200 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            L+ R K ++R+L  ++I+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +  IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++ +SEKP VTY D+GG D+QKQEI+E VELPL   +LY+QIGIDPP+GVLLYGPPGTGKTML KA
Sbjct:    9 LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 84/189 (44.44%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  170 LTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            L E+    ++ Y +L+ L R+LE    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++    +V S+TG  + V     IN E LKP A VAL++ + A+V+VLP   D  +      EKP+V+Y DIGG D+Q +EIREAVELPL   EL+ ++GI+PP+GVLLYGPPGTGKT+LAKA
Sbjct:    9 LLEKLKKLEEDYYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKA 194          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.414e-40
Identity = 85/181 (46.96%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  194 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            DD    LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D++  IV +  G  + VRI   I RE LKP A VAL + + A+V++LP E D S+      E+P V+YNDIGG D Q QE+REA+ELPL H EL++++GI+PP+GVLLYGPPG GKT++AKA
Sbjct:   15 DDYIMYLKKRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKA 192          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 85/181 (46.96%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  194 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV +  G  + VRI   I R+ LKP A VAL + + A+V++LP E D S+      E+P VTYNDIGG + Q QE+REA+ELPL H EL++Q+GI+PP+GVLLYGPPG GKT++AKA
Sbjct:   14 DDYVTFLKRRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKA 191          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 84/219 (38.36%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D K   EPP PTR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKA
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 238          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 84/219 (38.36%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D K   EPP PTR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKA
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 238          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 84/219 (38.36%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDLYSRLK-------------SLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D K   EPP PTR    ++ +   D  S+L               L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKA
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 238          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PRS6B_DICDI6.901e-7578.0226S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_YEAST9.013e-7574.4426S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_CAEEL3.425e-7469.90Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS6B_ENCCU5.130e-6262.0126S protease regulatory subunit 6B homolog OS=Ence... [more]
PSMR_ARCFU5.519e-4044.44Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_THEON9.414e-4046.96Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRKO1.606e-3946.96Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS4_RAT3.577e-3938.3626S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE3.577e-3938.3626S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN3.577e-3938.3626S protease regulatory subunit 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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