DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6088 contig Csv1_Contig6088:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  548 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +    D+TY D+GG   Q  +IRE +ELPL + E++  IGI  P+GVL++G PGTGKT +AKA
Sbjct:  518 EENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKA 580          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  365 MVDQNNGIVGSTTGSNYYVRILSTINRELL------KPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +  + +G VG+   +     ++ TI R L       K S  V L    +A+VD+ P  A   I L    E P V ++DIGG +  K +++E ++LPL   E + ++GI  P+GVLLYGPPG  KT+ AKA
Sbjct:  445 IASKTHGYVGADLTALCRESVMKTIQRGLGTDANIDKFSLKVTLKDVESAMVDIRP-SAMREIFL----EMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKA 569          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            PDV + D+GG D+ K EI + +E+PL H EL+ + G+    G+L YGPPGTGKT+LAKA
Sbjct:  808 PDVKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKA 865          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P+VT++DIGG D+ K EI + +++PL H EL+   G+    G+L YGPPGTGKT+LAKA
Sbjct:  697 PNVTWDDIGGMDVVKGEIMDTIDMPLKHPELFSS-GMKKRSGILFYGPPGTGKTLLAKA 754          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            PDV + DIGG D+ K EI + +++PL H EL+   G+    G+L YGPPGTGKT+LAKA
Sbjct:  834 PDVKWEDIGGLDLVKDEIMDTIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKA 891          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P+V + D+GG D+ K EI + +++P+ H EL+   GI    G+L YGPPGTGKT+LAKA
Sbjct:  814 PNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKA 871          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  497 LVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            LV   P   D +I   S +E  DV+++D+ GCD  K+E+ + VE  L + E + QIG   P+GVLL GPPG GKT+LAKA
Sbjct:  142 LVGTFPKFLDQNIG--SFAENTDVSFSDVQGCDEVKKELVDVVEF-LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKA 218          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P+VT++DIGG D  K EI + +++PL H EL+   G+    G+L YGPPGTGKT++AKA
Sbjct:  727 PNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKA 784          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  560 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P V ++DIGG +  K  +R+ ++LPL   EL+ Q G+ P  GVLLYGPPGTGKT+LAKA
Sbjct:  650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  554 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            E P VT++D+GG    K+++++AVE P+ H   + ++GI P RG+LL+GPPG  KT LAKA
Sbjct:  279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKA 339          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
CDAT_PLAF72.854e-1250.79Putative cell division cycle ATPase OS=Plasmodium ... [more]
AFG2_YEAST2.854e-1236.92ATPase family gene 2 protein OS=Saccharomyces cere... [more]
PEX6_PICAN4.869e-1254.24Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
PEX6_KLULA8.305e-1254.24Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
PEX6_DEBHA8.305e-1254.24Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
PEX6_PICPA4.122e-1150.85Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
YME1_SCHMA5.383e-1147.50Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PEX6_YEAST5.383e-1152.54Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
PEX6_SCHPO7.030e-1155.93Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
CD48B_ARATH9.182e-1149.18Cell division control protein 48 homolog B OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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