DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 82/183 (44.81%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  188 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D++  IV +  G  + VRI   I+R+ L+P   VAL + + A+V++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GKT++AKA
Sbjct:   14 DYDDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 193          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 84/219 (38.36%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDLYSR-------------LKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D K   EPP PTR    ++ +   D  S+             L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKA
Sbjct:   20 DKKKKYEPPVPTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 238          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38
Identity = 81/181 (44.75%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  194 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I R+ L+P A VAL + + A++++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GKT++AKA
Sbjct:   16 DDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 193          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38
Identity = 89/219 (40.64%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  131 KPVSEPPPPTRSDLTEQWSDEDDLYS--------------RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            KP  EPP PTR+   ++ +      S              RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D ++ IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKA
Sbjct:   28 KPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 244          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  194 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            DD  + LK   RQLE   +Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I++  L+P   VAL + + A++++LP   D ++      E+P+VTYNDIGG   Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GKT++AKA
Sbjct:   13 DDYVTYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKA 190          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 84/220 (38.18%), Postives = 137/220 (62.27%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDLYSRLKS-------------LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D K   EPP PTR    ++ +   D   +L               L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKA
Sbjct:   19 DKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKA 237          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 76/176 (43.18%), Postives = 122/176 (69.32%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            R K+L+++LE    ++  +++E +  +  + + + +++R++  PL++G   E++D    IV S+TG  +   +  T++R  L+P A+VAL++ S A+VDVLP E DS +  +   E PDV+Y+DIGG D Q +EIRE VE PL   EL++++G++PP+GVLLYGPPGTGKT+LAKA
Sbjct:   57 RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKA 232          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 77/172 (44.77%), Postives = 117/172 (68.02%), Query Frame = 2
Query:  221 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            L+R++  +++Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV +  G  + VRI   I R+ LKP + VAL + + A+V++LP E D S+      EKP VTY DIGG + Q  E+REAVELPL H EL++++GI+PP+GVLLYGPPG GKT++AKA
Sbjct:   20 LKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKA 191          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 78/179 (43.58%), Postives = 123/179 (68.72%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N+ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKA
Sbjct:   64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKA 241          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 78/179 (43.58%), Postives = 123/179 (68.72%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N+ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKA
Sbjct:   64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKA 241          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSMR_PYRHO4.672e-3944.81Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PRS4_CHICK4.672e-3938.3626S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_PYRAB1.359e-3844.75Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PRS4_SCHPO3.028e-3840.6426S protease regulatory subunit 4 homolog OS=Schiz... [more]
PSMR_PYRFU5.166e-3843.65Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS4_DROME5.166e-3838.1826S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_METKA6.747e-3843.18Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_THEGJ1.503e-3744.77Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS4B_ARATH1.503e-3743.5826S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH1.503e-3743.5826S proteasome regulatory subunit 4 homolog A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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