DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6088 contig Csv1_Contig6088:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 77/178 (43.26%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++ IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + P  +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKA
Sbjct:   58 KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 78/180 (43.33%), Postives = 121/180 (67.22%), Query Frame = 2
Query:  197 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +L +R   L+ Q   ++ ++ YV+ ++   +REL + + E+++++S PLVIG   +++D +  IV S+ G  + VR    I+ +LLKP     L++ S A+VDVLP   D+ I  +   E P+ TY +IGG + Q +EIREAVELPLT  +L++++GI PP+GVLLYGPPGTGKT+LA+A
Sbjct:   27 NLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARA 206          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 80/214 (37.38%), Postives = 134/214 (62.62%), Query Frame = 2
Query:  143 EPPPPTRSDLTEQWSDEDDLYSRLKSL-------------QRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            E P P+R    ++ S   D  S+L ++             +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D  + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++   + P  TY D+GG D Q QEI+EAVELPLTH E Y+++GI PP+GV+LYG PGTGKT+LAKA
Sbjct:   29 EAPIPSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKA 241          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 75/178 (42.13%), Postives = 118/178 (66.29%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D+++ IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P  +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKA
Sbjct:   69 RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKA 246          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 74/174 (42.53%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  215 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            ++L  ++  ++  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V STTG ++ +     I+R+ L+P A VAL++ + ++VDVLP E D  ++ +   EKPDV+Y  IGG + Q +E++E VELPL   EL+++IGI+PP+GVLLYGPPGTGKT+LAKA
Sbjct:   31 RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKA 204          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 78/193 (40.41%), Postives = 120/193 (62.18%), Query Frame = 2
Query:  161 RSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            + DL  Q  +    L SR   L+ Q+   +  + Y++ ++   +RE+ + + E ++++S PL+IG  +++VD N  IV S+ G  + VR   ++N + +KP A   L++ S A+V++LP   D+ +  +   + P   Y DIGG   Q  E+REAVELPL   EL+ QIGI+PP+GVLLYGPPGTGKT+LAKA
Sbjct:   39 KQDLESQMLERISSLESRNLELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKA 231          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35
Identity = 78/198 (39.39%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  146 PPPPTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P P    DL     +   +L  R   L+ QL  I+  + Y++ ++   +RE+ + + E+++++S PLVIG   +++D+N  IV S+ G  + V I  ++N E +KP A   L++ S A+V++LP   D+ I  +   E P   Y +IGG + Q  EIREAVELPL   E+++++GI+PP+GVLL+GPPGTGKT+LA+A
Sbjct:    9 PEPQKGEDLYRYLLERVTNLEDRNTELREQLRQIEADKRYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARA 206          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 69/177 (38.98%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            S+ + L+ Q+  ++  + Y++ ++   +RE+ + + E++ +++ PL++G   +++D    +V S+ G  + VR+   +N   LK      L++ S A+V+VLP   DS +  +   + P  TY DIGG + Q  EIREAVELP+T  +L+++IGI+PP+GVLLYGPPGTGKT+LAKA
Sbjct:   30 SQNQELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKA 206          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PRS4_YEAST1.963e-3743.2626S protease regulatory subunit 4 homolog OS=Sacch... [more]
PSMR_METMJ3.348e-3743.33Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS4_CAEEL2.170e-3637.38Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_ORYSJ8.247e-3642.1326S protease regulatory subunit 4 homolog OS=Oryza... [more]
PSMR_METTH1.407e-3542.53Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METB61.837e-3540.41Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METPE5.346e-3539.39Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METHJ9.118e-3538.98Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_SULIY1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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