DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6088 contig Csv1_Contig6088:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 60/190 (31.58%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  194 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ---------NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D++  + K L+ + + +  +      E  ++++ +    ++++    +P ++   +E++D             +V ++T    ++     ++ + L+P   V +++ S  ++D LPPE DS +  +   EKP   Y+DIGG D Q QE+ EAV LP+TH E ++ IGI PP+GVL+YGPPGTGKT+LA+A
Sbjct:   32 DEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARA 221          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 60/152 (39.47%), Postives = 94/152 (61.84%), Query Frame = 2
Query:  281 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            N +  LLR  EE++ +Q     +G+ ++ + +N  +V       Y V I   I+ + +KP+  VAL   S  L+ +LP + D  +SL+   + PD TY  +GG + Q +EI+E +ELP+ H EL++ +GI  P+G+LLYGPPGTGKT+LA+A
Sbjct:   49 NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARA 198          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 60/158 (37.97%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  263 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            ++ ++  L R +   +EE+  +Q     +G  +E + +   +V +     Y V++   +N + LK    VAL   S  +  +LP + D  +SL+   + PD TY  IGG D Q +EIRE +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   92 LEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARA 249          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 64/177 (36.16%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  242 IDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            I  +E  ++D+ +NL+R  L+AQ            EE++++Q     +G+ ++++ +   ++  +    Y V I  +I  + L P   VAL   S AL  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H EL++ +GI  P+GV++YGPPGTGKT+LA+A
Sbjct:   35 IQEKEIVLRDKIENLRR--LQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARA 209          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 61/154 (39.61%), Postives = 93/154 (60.39%), Query Frame = 2
Query:  278 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR-ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            K LK++  + ++ +K IQ +  +IG+ +  +D+   IV +  G  Y VR  +  ++  LL P A V L   +  ++ +LP E D  I  ++      V+Y +IGG   Q +E+RE VELPL   EL+ ++GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   37 KKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARA 190          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 2
Query:  158 TRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINREL---LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            T  D+   + D      +L++L+ QL  ++ + E          E    +++L R   E K+++  PL I    E+ D+  G V    G+N     L+ +  EL   L+P + VA++ +S ++V  L  EAD    ++   + PDV Y DIGG D Q +E+RE VELP+    L++ +GI+PP GVLL+GPPGTGKT++AKA
Sbjct:    6 TVEDVELPYDDSASQQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLFIATVQELTDE--GAVIKQHGNNQ--EALTEVTDELRATLEPGSRVAVN-NSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKA 202          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  224 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  224 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  224 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  224 QRQLEFIDIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            Q  L  I+  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+A
Sbjct:   22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PRS6A_DICDI2.251e-2531.5826S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS8_SCHPO3.840e-2539.4726S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_ENCCU3.840e-2537.9726S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS8_NAEFO6.550e-2536.1626S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS10_DICDI6.550e-2539.6126S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR2_HALSA1.459e-2435.64Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS8_RAT5.545e-2436.6126S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG5.545e-2436.6126S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE5.545e-2436.6126S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN5.545e-2436.6126S protease regulatory subunit 8 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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