DR403383

Overview
NameDR403383
Unique NameDR403383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403383_ssr42 microsatellite DR403383_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:97..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.240e-29
Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = 3
Query:  222 EHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLN----RRLRLPADAQK--APILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            + D RF +FK NLR        +  A +  G+T F++LT  E+R  +LG      RR+    +     +  +  +++P   DWR  GAV  +KDQG CGSCW+FS   A+EG + + TGELVSLSEQ+LVDCD         S + GCNGGLM+ AF++I+K
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMK 177          

HSP 2 Score: 26.5646 bits (57), Expect = 3.240e-29
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG+  EKDYPY G  G
Sbjct:  179 GGLNTEKDYPYHGTNG 194          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.219e-29
Identity = 64/177 (36.16%), Postives = 103/177 (58.19%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            LL A  +F  F   F+K Y+++ E  +RF++F+ NL     + L D +A + + KFSDL+  E   ++ GL+  L+     +   +  P +  P +FDWR    VT VK+QG CG+CW+F+  G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E ++
Sbjct:   21 LLKAPSYFEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLLHTAYEAVM 188          

HSP 2 Score: 25.0238 bits (53), Expect = 4.219e-29
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  685 LGGVEREKDYPYTGXXG 735
            +GG++ E DYPY    G
Sbjct:  190 MGGIQAENDYPYEANNG 206          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.494e-29
Identity = 63/177 (35.59%), Postives = 104/177 (58.76%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            +L A ++F  F  KF+K+Y+++ E   RF++F+ NL     +   D TA + + KF+DL+  E   ++ GL+  L+     +   +  P +  P +FDWR    VT VK+QG CG+CW+F+  G+LE    +   + ++LSEQQL+DCD           D+GC+GGL+++AFE ++
Sbjct:   21 VLKAPNYFEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCDF---------VDAGCDGGLLHTAFEAVM 188          

HSP 2 Score: 25.0238 bits (53), Expect = 5.494e-29
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  685 LGGVEREKDYPYTGXXG 735
            +GG++ E DYPY    G
Sbjct:  190 MGGIQAESDYPYEANNG 206          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.152e-29
Identity = 70/181 (38.67%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  156 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            L A ++F  F  +F+K Y+++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+    LP   Q   K  +L  P    P +FDWR    VT VK+QG CG+CW+F+  G+LE    +   EL++LSEQQ++DCD           D+GCNGGL+++AFE I+K
Sbjct:   22 LKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQND-SAKYEINKFSDLSKDETIAKYTGLS----LPTQTQNFCKVILLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIK 188          

HSP 2 Score: 24.6386 bits (52), Expect = 7.152e-29
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  682 RLGGVEREKDYPY 720
            ++GGV+ E DYPY
Sbjct:  188 KMGGVQLESDYPY 200          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.308e-29
Identity = 74/181 (40.88%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  147 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            D   NA+ H   +KS   + Y T EE ++R  V++ N+R  +          HG T     F D+T  EFR+   G   +        + P++    +P   DWR+ G VT VK+QG CGSCW+FSA+G LEG  FL TG+L+SLSEQ LVDC H+         + GCNGGLM+ AF+YI
Sbjct:   22 DQTFNAQWH--QWKSTHRRLYGTNEE-EWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGRLFQEPLML--QIPKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHD-------QGNQGCNGGLMDFAFQYI 190          

HSP 2 Score: 21.557 bits (44), Expect = 9.308e-29
Identity = 7/16 (43.75%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG++ E+ YPY    G
Sbjct:  194 GGLDSEESYPYEAKDG 209          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.212e-28
Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            LL A  +F  F  KF+K Y+++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+  L+     +   +  P +  P +FDWR    VT VK+QG CG+CW+F+  G+LE    +   +L++LSEQQL+DCD           D GC+GGL+++A+E ++
Sbjct:   21 LLKAPSYFEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDVGCDGGLLHTAYEAVM 188          

HSP 2 Score: 25.0238 bits (53), Expect = 1.212e-28
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  685 LGGVEREKDYPYTGXXG 735
            +GG++ E DYPY    G
Sbjct:  190 MGGIQAENDYPYEANNG 206          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.484e-28
Identity = 74/170 (43.53%), Postives = 91/170 (53.53%), Query Frame = 3
Query:  183 FKSKFSKTYATQEEHDYRFRVFKANLRRA----KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGS-CDSGCNGGLMNSAFEYI 677
            FK KF + Y   EE  YR  VF  NL+      K+ +  + T    + +FSD+T  +F     G  +  R  A        P +   T+ DWR  GAVT VKDQG CGSCW+FS TG +EG HFL TG LVSLSEQQLVDC         GS  + GCNGG +  A  Y+
Sbjct:   23 FKGKFGRKYVDLEEERYRLNVFLDNLQYIEEFNKKYERGEVTYNLAINQFSDMTNEKFNAVMKGYKKGPRPAAVFTSTDAAPES---TEVDWRTKGAVTPVKDQGQCGSCWAFSTTGGIEGQHFLKTGRLVSLSEQQLVDC-------AGGSYYNQGCNGGWVERAIMYV 182          

HSP 2 Score: 21.1718 bits (43), Expect = 3.484e-28
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 1
Query:  688 GGVEREKDYPY 720
            GGV+ E  YPY
Sbjct:  186 GGVDTESSYPY 196          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.527e-28
Identity = 74/182 (40.66%), Postives = 99/182 (54.40%), Query Frame = 3
Query:  162 AEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT-KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPT---DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAXWG 695
            A  H+  FK +  K +    E  +RF  FK N++ A      +P A + V+ KF+DLTP EF + +L  +   R   D  K  +   +  P+     DWRD GAVT VK+QG CGSCW+FSA G +EG    S   LVSLSEQ LV CD         + D GCNGGLM+ A  +I+++  G
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKD-HKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNG 209          

HSP 2 Score: 20.4014 bits (41), Expect = 4.527e-28
Identity = 9/19 (47.37%), Postives = 9/19 (47.37%), Query Frame = 1
Query:  679 SRLGGVEREKDYPYTGXXG 735
            S  G V  E  YPYT   G
Sbjct:  206 SHNGSVFTEASYPYTSGGG 224          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.532e-28
Identity = 62/182 (34.07%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  159 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT--------NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            +A  +F  F S+++K Y++++E  YR+ +F+ N+     +   + +AV+ + +F+D+T +E       +NR   L +    A    T           P +FDWR++  VT VKDQG CG+CW+F+  GALE  + +    L+ L+EQQLVDCD           D GC+GGL+++A+E I+
Sbjct:   35 SAPLYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEV------VNRHTGLASGDIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCDF---------VDMGCDGGLIHTAYEQIM 201          

HSP 2 Score: 25.409 bits (54), Expect = 4.532e-28
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  685 LGGVEREKDYPY 720
            +GGVE+E DYPY
Sbjct:  203 IGGVEQEYDYPY 214          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.535e-28
Identity = 69/182 (37.91%), Postives = 104/182 (57.14%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            LL A ++F  F  +F+K Y ++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+    LP   Q   K  +L  P    P +FDWR    VT VK+QG CG+CW+F+   +LE    +   +L++LSEQQ++DCD           D+GCNGGL+++AFE I+K
Sbjct:   21 LLKAPNYFEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKNQND-SAKYEINKFSDLSKDETIAKYTGLS----LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIK 188          

HSP 2 Score: 24.6386 bits (52), Expect = 4.535e-28
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  682 RLGGVEREKDYPY 720
            ++GGV+ E DYPY
Sbjct:  188 KMGGVQLESDYPY 200          
The following BLAST results are available for this feature:
BLAST of DR403383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CYSP4_BRANA3.240e-2941.98Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CATV_NPVCD4.219e-2936.16Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATV_NPVCF5.494e-2935.59Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVBM7.152e-2938.67Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATL1_RAT9.308e-2940.88Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CATV_NPVAP1.212e-2836.16Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CYSP1_HOMAM3.484e-2843.53Digestive cysteine proteinase 1 OS=Homarus america... [more]
CYSP1_LEIPI4.527e-2840.66Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATV_NPVMC4.532e-2834.07Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVAC4.535e-2837.91Viral cathepsin OS=Autographa californica nuclear ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403383 ID=DR403383; Name=DR403383; organism=Citrus sinensis; type=EST; length=742bp
GGGGAAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGA
TGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAA
GGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTNGGTGGGGTTGAGC
GAGAGAAGGACTACCCTTACACTGGGANNNACGGTGGTTCCT
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