DR403383

Overview
NameDR403383
Unique NameDR403383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403383_ssr42 microsatellite DR403383_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:97..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.897e-28
Identity = 66/183 (36.07%), Postives = 99/183 (54.10%), Query Frame = 3
Query:  159 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT-------NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKA 686
            NA+  F+ F  K++K Y   +E + RF +FK NL     R  L+ +A+  +   +D++ +E  ++  GL   L +  + + +   PT         +P  FDWRD  +VT VK Q  CGSCW+FSA   +E  + +     + LSEQQLVDCD           ++GCNGGLM+ AFE I++A
Sbjct:   38 NAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSL-MRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGLMSWAFEGIIRA 210          

HSP 2 Score: 26.1794 bits (56), Expect = 5.897e-28
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  682 RLGGVEREKDYPYTGXXG 735
            R GG+  E  YPYTG  G
Sbjct:  209 RAGGISYEAPYPYTGVDG 226          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.900e-28
Identity = 72/181 (39.78%), Postives = 99/181 (54.70%), Query Frame = 3
Query:  147 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            D   +AE H   +KS   + Y T EE ++R  +++ N+R  +          HG    +  F D+T  EFR+   G   +        + P++    +P   DWR+ G VT VK+QG CGSCW+FSA+G LEG  FL TG+L+SLSEQ LVDC H          + GCNGGLM+ AF+YI
Sbjct:   22 DQTFSAEWH--QWKSTHRRLYGTNEE-EWRRAIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLK--IPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSH-------AQGNQGCNGGLMDFAFQYI 190          

HSP 2 Score: 21.557 bits (44), Expect = 5.900e-28
Identity = 7/16 (43.75%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG++ E+ YPY    G
Sbjct:  194 GGLDSEESYPYEAKDG 209          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.000e-27
Identity = 69/182 (37.91%), Postives = 104/182 (57.14%), Query Frame = 3
Query:  153 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            LL A ++F  F  +F+K Y ++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+    LP   Q   K  +L  P    P +FDWR    VT VK+QG CG+CW+F+   +LE    +   +L++LSEQQ++DCD           D+GCNGGL+++AFE I+K
Sbjct:   21 LLKAPNYFEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIIIKNQND-SAKYEINKFSDLSKDETIAKYTGLS----LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIK 188          

HSP 2 Score: 24.6386 bits (52), Expect = 1.000e-27
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  682 RLGGVEREKDYPY 720
            ++GGV+ E DYPY
Sbjct:  188 KMGGVQLESDYPY 200          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.693e-27
Identity = 73/182 (40.11%), Postives = 99/182 (54.40%), Query Frame = 3
Query:  162 AEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT-KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPT---DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAXWG 695
            A  H+  FK +  K +    E  +RF  FK N++ A      +P A + V+ KF+DLTP EF + +L  +   R   +  K  +   +  P+     DWRD GAVT VK+QG CGSCW+FSA G +EG    S   LVSLSEQ LV CD         + D GCNGGLM+ A  +I+++  G
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKN-HKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNG 209          

HSP 2 Score: 20.4014 bits (41), Expect = 1.693e-27
Identity = 9/19 (47.37%), Postives = 9/19 (47.37%), Query Frame = 1
Query:  679 SRLGGVEREKDYPYTGXXG 735
            S  G V  E  YPYT   G
Sbjct:  206 SHNGSVFTEASYPYTSGGG 224          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.203e-27
Identity = 69/169 (40.83%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDS-GCNGGLMNSAFEYI 677
            FS F  ++ K Y + EE   RF VFK NL   +       +    + +F+DLT  EF+R  LG  +     A  + +  +    +P   DWR+ G V+ VK+QG CGSCW+FS TGALE A+  + G+ +SLSEQQLVDC        +G+ ++ GC+GGL + AFEYI
Sbjct:   59 FSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCS--ATLKGSHKITEATVPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDC--------AGTFNNFGCHGGLPSQAFEYI 217          

HSP 2 Score: 27.7202 bits (60), Expect = 2.203e-27
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXGG 738
            GG++ E+ YPYTG  GG
Sbjct:  221 GGLDTEEAYPYTGKDGG 237          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 72/163 (44.17%), Postives = 99/163 (60.74%), Query Frame = 3
Query:  201 KTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLNRRLRLPAD-AQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            K Y    E + RF++FK NL+R +     DP   +  G+ KFSDLT  EF+  +LG     +  +D A++      + LP + DWR+ GAV   VK QG CGSCW+F+ATGA+EG + ++TGELVSLSEQ+L+DCD        G+ + GC GG    AFE+I
Sbjct:   50 KNYNGLGEKERRFKIFKDNLKRIEEHNS-DPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERYQYKEGDVLPDEVDWRERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDR-------GNDNFGCAGGGAVWAFEFI 204          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.866e-27
Identity = 65/184 (35.33%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  159 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---------PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            +A  ++  F  + +K Y T ++ D  F  FK NL        +   AV+G+ KFSD+    F  +  GL   L    D+   P           P+   P  FDWR    VT VK+QG CGSCW+F+A G +E  + +    L+ LSEQQL+DCD           D GC+GGLM+ AF+ I++
Sbjct:   28 SASVYYENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDR---------VDQGCDGGLMHLAFQEIIR 202          

HSP 2 Score: 28.4906 bits (62), Expect = 4.866e-27
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  682 RLGGVEREKDYPYTG 726
            R+GGVE E DYPY G
Sbjct:  202 RIGGVEHEIDYPYQG 216          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.299e-27
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 3
Query:  222 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            EH+ RF VF  NL+       RA  R         G+ +F+DLT  EFR  FLG     R  A  ++       +LP   DWR+ GAV  VK+QG CGSCW+FSA   +E  + L TGE+++LSEQ+LV+C        +   +SGCNGGLM+ AF++I+K
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC-------STNGQNSGCNGGLMDDAFDFIIK 219          

HSP 2 Score: 23.8682 bits (50), Expect = 6.299e-27
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG++ E DYPY    G
Sbjct:  221 GGIDTEDDYPYKAVDG 236          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.325e-27
Identity = 69/173 (39.88%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLG--LNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            +  ++S  + + +  E+H  RF VFKAN+        +D      + KF+D+T  EFR  + G  +N           +          +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LVSLSEQ+LVDCD E         + GCNGGLM SAFE+I
Sbjct:   40 YERWRSHHTVSRSLGEKHK-RFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHKMFRGSQHGSGTFMYEKVGSVPASVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKE--------ENQGCNGGLMESAFEFI 203          

HSP 2 Score: 23.483 bits (49), Expect = 6.325e-27
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG+  E +YPYT   G
Sbjct:  207 GGITTESNYPYTAQEG 222          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 74/193 (38.34%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  150 HLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAK---RRQLLD---------PTAVHGVTKFSDLTPSEFRRQ----FLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            +L  +E +F  F  +++K+Y   +E+ YR+ VFK NL +     R  LL+          +A  GV KFSD TP E        FL L++   L  + +     P   LP  +DWRD   VT +KDQG CGSCW+F A G +E  + +   +L+ LSEQQL+DCD           D GCNGGLM+ AF+ +L
Sbjct:   49 NLDQSEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTL-CENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD---------EVDLGCNGGLMHLAFQELL 231          
The following BLAST results are available for this feature:
BLAST of DR403383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CATV_GVXN5.897e-2836.07Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATL1_MOUSE5.900e-2839.78Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATV_NPVRO1.000e-2737.91Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
LMCPA_LEIME1.693e-2740.11Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
ALEUL_ARATH2.203e-2740.83Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CPR2_ARATH4.134e-2744.17Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATV_NPVST4.866e-2735.33Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
ORYB_ORYSJ6.299e-2742.24Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSEP_VIGMU6.325e-2739.88Vignain OS=Vigna mungo PE=1 SV=1[more]
CATV_NPVHZ7.051e-2738.34Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403383 ID=DR403383; Name=DR403383; organism=Citrus sinensis; type=EST; length=742bp
GGGGAAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGA
TGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAA
GGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTNGGTGGGGTTGAGC
GAGAGAAGGACTACCCTTACACTGGGANNNACGGTGGTTCCT
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