DR403383

Overview
NameDR403383
Unique NameDR403383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403383_ssr42 microsatellite DR403383_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7034 contig Csv1_Contig7034:97..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.012e-23
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  192 KFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +LG          + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC    +         GCNGG +   F++I+
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFII 204          

HSP 2 Score: 24.2534 bits (51), Expect = 1.012e-23
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG+  E++YPYT   G
Sbjct:  207 GGINTEENYPYTAQDG 222          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            HF  +  +  K Y+ +E H +R +VF +N R+       + T   G+ +FSD++  E R ++L    +      A K   L  T   P   DWR  G  V+ VK+QG+CGSCW+FS TGALE A  ++TG+++SL+EQQLVDC    +       + GC GGL + AFEYI
Sbjct:   34 HFKSWMVQHQKKYSLEEYH-HRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQ---NCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYI 193          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.320e-23
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  165 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            ++H+ L+K    K Y  + E + R  +++ NL+      L     +H    G+    D+T  E   + +G  R  R               LP   DWR+ G VT VK QG+CG+CW+FSA GALEG   L TG+L+SLS Q LVDC +E   E+ G  + GC GG M  AF+YI+
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCR-MGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE---EKYG--NKGCGGGYMTEAFQYII 202          

HSP 2 Score: 20.4014 bits (41), Expect = 1.320e-23
Identity = 6/11 (54.55%), Postives = 8/11 (72.73%), Query Frame = 1
Query:  688 GGVEREKDYPY 720
            GG+E +  YPY
Sbjct:  205 GGIEADASYPY 215          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 64/185 (34.59%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  141 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPA---DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            S+D L + E    LF S   K +K Y + +E  YRF +F+ NL         + +   G+  F+DL+  EF+++++G            D +        + P   DWR  GAVT VK+QGACGSCW+FS    +EG + + TG L+ LSEQ+LVDCD             GC GG   ++ +Y+
Sbjct:   34 SQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH---------SYGCKGGYQTTSLQYV 209          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  171 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            HF  +  +  KTY++ E +++R ++F  N R+ +     + T    + +FSD++ +E + +FL    +      A K+  L  T   P+  DWR  G  V+ VK+QGAC SCW+FS TGALE A  +++G+++SL+EQQLVDC    +       + GC GGL + AFEYIL
Sbjct:   32 HFKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYIL 192          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.786e-23
Identity = 70/178 (39.33%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  159 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRL-PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            N +  +  +K+   + Y   EE  +R  V++ N++  +          HG T     F D+T  EFR Q +G  R  +       + P+    DLP   DWR  G VT VK+Q  CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGG M  AF+Y+
Sbjct:   24 NLDTKWYQWKATHRRLYGANEE-GWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFL--DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGFMARAFQYV 190          

HSP 2 Score: 20.4014 bits (41), Expect = 3.786e-23
Identity = 6/11 (54.55%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  688 GGVEREKDYPY 720
            GG++ E+ YPY
Sbjct:  194 GGLDSEESYPY 204          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.824e-23
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  429 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 677
            P   DWR+ G VT VKDQG CGSCW+FS TGALEG HF + G+LVSLSEQ LVDC     PE     + GCNGGLM+ AF+Y+
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSR---PEG----NQGCNGGLMDQAFQYV 77          

HSP 2 Score: 23.0978 bits (48), Expect = 3.824e-23
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  688 GGVEREKDYPYT 723
            GG++ E+ YPYT
Sbjct:   81 GGIDSEESYPYT 92          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 8.317e-23
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  192 KFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +L           + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC    +         GCNGG +   F++I+
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFII 204          

HSP 2 Score: 24.2534 bits (51), Expect = 8.317e-23
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG+  E++YPYT   G
Sbjct:  207 GGINTEENYPYTAQDG 222          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.083e-22
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 3
Query:  174 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRL-RLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYIL 680
            F  +  K  K Y +  E + R  +F+ NLR    R   + +   G+ +F+DL+  E+     G + R  R       +    T+D   LP   DWR+ GAVT VKDQG C SCW+FS  GA+EG + + TGELV+LSEQ L++C+ E         ++GC GG + +A+E+I+
Sbjct:   56 FESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGGKVETAYEFIM 219          

HSP 2 Score: 20.7866 bits (42), Expect = 1.083e-22
Identity = 7/16 (43.75%), Postives = 9/16 (56.25%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG+  + DYPY    G
Sbjct:  222 GGLGTDNDYPYKALNG 237          
BLAST of DR403383 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.084e-22
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  420 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 683
            + LP   DWR+ G + GVKDQG+CGSCW+FSA  A+E  + + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+++K
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEFVIK 95          

HSP 2 Score: 23.8682 bits (50), Expect = 1.084e-22
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  688 GGVEREKDYPYTGXXG 735
            GG++ E+DYPY    G
Sbjct:   97 GGIDTEEDYPYKERNG 112          
The following BLAST results are available for this feature:
BLAST of DR403383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
ACTN_ACTDE1.012e-2335.37Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CATH_PIG1.245e-2339.18Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATS_MOUSE1.320e-2337.50Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
PAPA2_CARPA2.123e-2334.59Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATH_MOUSE2.773e-2337.79Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATL2_HUMAN3.786e-2339.33Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATL1_CHICK3.824e-2361.45Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
ACTN_ACTCH8.317e-2334.76Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CPR4_ARATH1.083e-2236.99Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CYSPL_SOLLC1.084e-2252.27Low-temperature-induced cysteine proteinase (Fragm... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403383 ID=DR403383; Name=DR403383; organism=Citrus sinensis; type=EST; length=742bp
GGGGAAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTCCTC
CTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGACGA
TGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAGATC
ATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCC
AAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAA
GGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTG
TCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGT
CAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCAAAA
GGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGCGTG
ATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGC
TGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGAC
GGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACG
AGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGG
CTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTNGGTGGGGTTGAGC
GAGAGAAGGACTACCCTTACACTGGGANNNACGGTGGTTCCT
back to top