DR403374

Overview
NameDR403374
Unique NameDR403374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            MGRG++E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+    GK
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGK 53          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-12
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSS-SMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK--LLSEANKTLKQRLMEGYQVNTLQ--LNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQ-IGYQPADP 691
            FS+ GK++E  S   SM + ++RYQK         +S   A    +QQ Y    ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ K  +L E N+ L + + + +  +  Q  ++PS  D  +G+        +    L+  P L     QPA P
Sbjct:   23 FSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQKMVDPSMLD-HFGVFYQDDHQAARSSMLQLSPQLHPFRLQPAQP 196          

HSP 2 Score: 35.039 bits (79), Expect = 1.058e-12
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  103 GLLKKAYELSVLCDAEVALIILLQ*GK 183
            GLLKKA EL++LCDA++ +II    GK
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGK 28          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 31/47 (65.96%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIM 47          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            MGRG++E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+    GK
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGK 53          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALII
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 47          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALII
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 47          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALII
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 47          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 31/47 (65.96%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALII
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 47          
The following BLAST results are available for this feature:
BLAST of DR403374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
MAD16_ORYSJ5.971e-1364.15MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AP32_ASAEU1.058e-1228.80MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AP3_ARATH3.870e-1265.96Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
TT16_ARATH8.622e-1260.38Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MEF2D_XENLA7.299e-1165.96Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT7.299e-1165.96Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE7.299e-1165.96Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN7.299e-1165.96Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403374 ID=DR403374; Name=DR403374; organism=Citrus sinensis; type=EST; length=751bp
GGGGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGCTGAA
GAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAA
ACGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAG
GTTGCTCTCATCATTCTTCTCCAATAGGGGAAAGCTGTACGAGTNNTGCA
GTAGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTAT
GGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAG
CCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGAT
CCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAG
CTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATC
AACAAGAACTCAGTACATGCTGGACACCCTTACTGAACTGCAACATAAGT
TGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATAC
CAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGG
GCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGAAT
GTGAACCCACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTT
GTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCATG
C
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