DR403371

Overview
NameDR403371
Unique NameDR403371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:525..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 72/204 (35.29%), Postives = 102/204 (50.00%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 594
            W  G +F  +VV+K A   LDE  I Y E ++ Y V     +        + A    +L N V+ ED++++ G R+ G+V NW    M       +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:   65 WGGGMMFPRIVVQKEACRILDEYDIWYREFEEGYYVADSIEVVAKLTAGAIDA--GAELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.838e-22
Identity = 67/199 (33.67%), Postives = 98/199 (49.25%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 594
            W  G +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M       +DP  M     V + GHD    A   + ++  G    V G   +    AE  I+  T+EV PG+ VTGM    + G  RMGP FG M++SG++AA L  + LG+
Sbjct:   65 WGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM---AGLHVDPLTMACTCTVDATGHD----AMIARMVEKKGGALTVKGESFMWAERAESQILAHTKEVFPGLFVTGMAANAVAGECRMGPIFGGMLLSGERAAELVAERLGR 254          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.285e-21
Identity = 67/199 (33.67%), Postives = 107/199 (53.77%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKS--IGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G +F  +VV++ A   LD+ GI Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++    +  +DP ++  K+V+   GH+     T ++++ +  IG + ++ G K +     E  +V  T+E+ PG+IV GM       +PRMGP FG M++SG+KAA LAL+ L
Sbjct:   65 WAGGMMFPRIVVQEEACRILDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTVQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGNLGKL-GEKPMWSEVGEQLVVDATKEIYPGLIVAGMAANAATCSPRMGPVFGGMLLSGEKAAKLALEKL 257          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.862e-21
Identity = 67/221 (30.32%), Postives = 110/221 (49.77%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:   71 WLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.862e-21
Identity = 67/221 (30.32%), Postives = 110/221 (49.77%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGI--DYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            WL G L + + VR PA   LD+LG+  +YDE++  + +  A    S +++        ++ N     D++V+    V G V NW  V       +C+DP  +EA VVV + GHD          G   A G++ ++  + GM +           + PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  +  L
Sbjct:   71 WLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMITAA-CDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHATGMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAVMDEL 290          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.738e-21
Identity = 63/197 (31.98%), Postives = 106/197 (53.81%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G +F  +VV++ A   LD+ GI Y E +S   + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GH+     T ++++ +  + E  + G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:   65 WAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGELGLLGEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.377e-21
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   19 LFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            LF  +V+  PA   L E+ I  ++ +  V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:   77 LFHKLVIESPADEVLKEMNIRLEKVEDGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---AGLHVDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 63/197 (31.98%), Postives = 105/197 (53.30%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G +F  +VV++ A   LD+ GI Y E +    + ++      +++   +    ++FN V+ ED++++   RV G+V NW  V+     +  +DP ++  K+V+   GHD     T ++++ +  + E  + G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct:   65 WAGGMMFPRIVVQEEACRVLDDFGIRYKEYEPGYFVANSVESVGKLIAGATSA-GAEVFNLVSFEDIMIRENDRVTGIVINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 63/201 (31.34%), Postives = 106/201 (52.74%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL-KSIGMIEEVP-----GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       +DP  + A+ V+ + GHD       VK + + IG     P     G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++SG++ A + ++ L
Sbjct:   65 WGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSRA-CQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHDCEI----VKVVERKIGPELNTPDGRIQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEMIIEKL 257          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METBU (Putative thiazole biosynthetic enzyme OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2109 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 61/198 (30.81%), Postives = 104/198 (52.53%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE-EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 591
            W  G +F  +VV++ A   LDE GI Y E ++   + ++      ++S   +    ++FN V  ED++++    + G+V NW  V +    +  +DP  + +KVVV   GH     +T  +++    + E  V G K +  +  E  ++  T+EV P + V GM    + GAPRMGP FG M++SG++ A L ++ LG
Sbjct:   65 WAGGMMFPRIVVQEDALHILDEFGISYHEYENGYYVANSIESVGKLISGATSA-GAEIFNLVNVEDVMIRENDEICGLVINWTAVEIG---KLHVDPLAIRSKVVVDGTGHPAVVCSTVQRKVPGAKLGELGVVGEKPMWADVGEKMLLDTTKEVYPNLYVAGMAANAVAGAPRMGPVFGGMLLSGKQVAELIIERLG 258          
The following BLAST results are available for this feature:
BLAST of DR403371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_METTP1.518e-2235.29Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METMJ9.838e-2233.67Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_METBF1.285e-2133.67Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALSA2.862e-2130.32Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS32.862e-2130.32Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_METAC3.738e-2131.98Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_SULAC6.377e-2132.29Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMA8.328e-2131.98Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METTH1.088e-2031.34Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_METBU1.088e-2030.81Putative thiazole biosynthetic enzyme OS=Methanoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403371 ID=DR403371; Name=DR403371; organism=Citrus sinensis; type=EST; length=673bp
GGGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCAGC
CCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAGCT
ATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCAAG
CTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAGGA
CTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGCGT
TGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAATGTAATG
GAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTTTGGGGC
CACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTG
GAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTG
ACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGA
GATTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGATGATAT
CGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAAT
GCATTAGACGGTACTATGTTGGGGAGGTGTTCACCCTGAGCTGATCTNAG
CTNNNNNNGATTCTGCTGAGACT
back to top