DR403371

Overview
NameDR403371
Unique NameDR403371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:525..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKA-------------LDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G +F+ +V+      +L E  I Y ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW         +  +DP  + AK  V   GH     A  V+ L   G+I  V G                +D  + E  +V  T+E+ PG+ V GM    + G PRMGP FG M++SG +AA L  + L
Sbjct:   65 WGGGMMFNELVLESELEWYLKEHHIKYKKEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINWMPTIKE---KLHVDPITVVAKFTVDGTGHP----ANLVRLLSKRGIINSVKGSSENLCSCGVVEYEFPMDAENGEKFVVENTKEIYPGLYVMGMAAVSVGGGPRMGPIFGGMIMSGLRAAELIEEEL 263          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:   69 WGGGMGFPNIVVEKPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:   69 WGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAIEK---AGLHIDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 58/192 (30.21%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   19 LFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   75 LFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 66/203 (32.51%), Postives = 95/203 (46.80%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 594
            W  G  F  +VV KPA   L   GI     D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:   69 WGGGMGFPNIVVEKPADEILRSAGIKLKSVDG-----EPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKISGVVIQSYSIEK---AGLHVDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 65/199 (32.66%), Postives = 98/199 (49.25%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYD--EQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE--EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W    LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH         K++      +  ++ G K++  + AE   +  TREV PG+ V GM      G PRMG  FG M++SG+K A   L+ L
Sbjct:   65 WGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDSGKIEGEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMGAIFGGMLLSGEKVAAEILERL 257          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 60/197 (30.46%), Postives = 98/197 (49.75%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDEQ-DSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 594
            G +  ++VV++ A   L +  + Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:   65 GNMLPSIVVQEEALPILRDFKVRYQPAGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            G LF  +VV + A   LD+ GI Y E  +++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +   V G ++     AE  IV  T ++V G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct:   73 GMLFHKVVVEREAKDILDDFGIRYTEHRNFLVADSAEF-----MAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 56/195 (28.72%), Postives = 98/195 (50.26%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G     + V+ PA   L E+GI  +E +  + +  +    + + +  +     K+   +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:   72 WGGGMGCPYITVQSPADEILSEVGIKLEEGEDGLFVADSVEVPAKLGTGAIDA-GAKVLTGIVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDY-DEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            W  G  F  +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+       VK+ K   +  +VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct:   72 WGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259          
The following BLAST results are available for this feature:
BLAST of DR403371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_FERNB1.571e-1930.29Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_METM62.051e-1933.33Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM52.679e-1933.33Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIN1.018e-1830.21Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METVS1.736e-1832.51Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_DESOH1.736e-1832.66Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_PYRAR2.268e-1830.46Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_ARCFU2.962e-1831.47Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_META33.869e-1828.72Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METJA1.244e-1632.65Putative thiazole biosynthetic enzyme OS=Methanoca... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403371 ID=DR403371; Name=DR403371; organism=Citrus sinensis; type=EST; length=673bp
GGGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCAGC
CCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAGCT
ATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCAAG
CTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAGGA
CTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGCGT
TGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAATGTAATG
GAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTTTGGGGC
CACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTG
GAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTG
ACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGA
GATTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGATGATAT
CGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAAT
GCATTAGACGGTACTATGTTGGGGAGGTGTTCACCCTGAGCTGATCTNAG
CTNNNNNNGATTCTGCTGAGACT
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