DR403371

Overview
NameDR403371
Unique NameDR403371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:525..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 60/195 (30.77%), Postives = 95/195 (48.72%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDEQ-DSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            G +   +VV++ A   L +  I Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:   65 GNMIPKIVVQEEAVPVLRDFKIRYKPVGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVVGLLWVWTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 56/195 (28.72%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            G +   +VV++ A   L +  + Y   +D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:   65 GNMLPKIVVQEEAVPILRDFKVRYKPAEDGLYTVDPAELIAKLAAGAVDA--GAKIILGVHVDDVIFRGDPPRVTGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDEQ-DSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 588
            G +   +VV++ A   L +  + Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+    S +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:   65 GNMIPKIVVQEEAVPVLKDFRVRYRPVGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSG---SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   13 GQLFSAMVVRKPAHIFLDELGIDYDEQ-DSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 594
            G +   +VV++ A   L +  + +    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:   65 GNMIPKIVVQEEALPILKDFKVRFKPAGDGLYTVDPAELIAKLAAGAIDA--GAKILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of DR403371 vs. ExPASy Swiss-Prot
Match: THI4_DESMR (Putative thiazole biosynthetic enzyme OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=DMR_31420 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 61/204 (29.90%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    4 WLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR--LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK-AAHLALKSLG 591
            W  G  F+ +VV++ +   L ++G+     +D+Y      A  T+   +  LA    K+FN ++ ED++++      RV G+V N + V +       +DP V+ +K +V + GH      T V++  ++       + G +++  ++AE   V+ TRE+ PG+ V GM      G+ RMGP FG M++SG+K AA +A K  G
Sbjct:   65 WGGGMTFNMIVVQEESVHLLTDVGVPVKRYKDNYFTADAVAATTTLASAACLA--GAKIFNCMSVEDVMLREENGVKRVTGIVINSSPVEI---AGLHVDPVVLGSKYLVEATGHAVEVLQTLVRKNDVRLNTPSGGIEGEQSMWADTAEINTVKNTREIFPGLYVAGMAANASYGSYRMGPIFGGMLLSGEKVAADIAAKLKG 263          
The following BLAST results are available for this feature:
BLAST of DR403371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_PYRIL8.066e-1630.77Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_PYRAE4.003e-1528.72Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_THENV5.228e-1529.23Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_PYRCJ6.829e-1527.41Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_DESMR2.197e-1329.90Putative thiazole biosynthetic enzyme OS=Desulfovi... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M13 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403371 ID=DR403371; Name=DR403371; organism=Citrus sinensis; type=EST; length=673bp
GGGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCAGC
CCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAGCT
ATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCAAG
CTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAGGA
CTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGCGT
TGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAATGTAATG
GAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTTTGGGGC
CACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTG
GAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTG
ACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGA
GATTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGATGATAT
CGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAAT
GCATTAGACGGTACTATGTTGGGGAGGTGTTCACCCTGAGCTGATCTNAG
CTNNNNNNGATTCTGCTGAGACT
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