DR403360

Overview
NameDR403360
Unique NameDR403360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5299 contig Csv1_Contig5299:1..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.733e-39
Identity = 83/240 (34.58%), Postives = 137/240 (57.08%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTR 745
            ++ +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L ++ L+++   FR +  + +++ T R+ S  WRTWAA  IQ AWRRY  R +
Sbjct:  415 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.587e-39
Identity = 83/238 (34.87%), Postives = 135/238 (56.72%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            ++ +L ++  +  + +L+ RD E WM               YE+ +W    G DE  L++ LP  LRR I+R+LCLDL+++VP F           C+R+   + ++   ++REGD +  M+FI+RGR++   +     G   + +L PG F G+ELLSW L       LP+S+ T   +  +EAF L A++L+++ + FR +  +++L+ T R+ S +WRTWAA  IQ AWRRY+ R
Sbjct:  398 MQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRR 634          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.165e-37
Identity = 83/238 (34.87%), Postives = 129/238 (54.20%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            V+ +L +  A+  + ++R RD E WM               + + +W T  G DE  +++ LP  LRR I+R+LCL L+++VP F           C+R+ P + +KD  +IREGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP S+ T   +  +EAF L A++L+++ + FR +  +++L+   RY S  WR W    IQ AWRRY  R
Sbjct:  374 VQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPDELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFR-RLHSKKLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 81/238 (34.03%), Postives = 130/238 (54.62%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            ++ +L +   +  + ++R  D E WM               Y++ +W    G DE  L+  LP  LRR IKR+LC DL+++VPLF           C+R++P + ++   ++REGDPV  M+FI+RG +    +     G   + ++ PG F G+ELL+W L    +  LP+S+ T   +  +EAF L A++L+++   FR +   ++L+   R+ S  WRTWAA  IQ AWRR+R R
Sbjct:  388 MQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFR-RLHTKQLRHKFRFYSHQWRTWAACFIQAAWRRHRKR 624          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.166e-33
Identity = 75/244 (30.74%), Postives = 125/244 (51.23%), Query Frame = 2
Query:   44 LHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTE 769
            L ++  +  + +++ RD E WM               + + +W    G DE  ++  LP  LRR I+R+LCL L+++VP F           C  +   + +    I REGDPV  M+F++RG+I+   +     G   ++ L PG F G+ELL+W L       LP+S+ +   +  +EAF L A++L+++   F+ +  +++L+   RY S  WR W A  +Q AWRRY+ R     +S+ E
Sbjct:  370 LQSMSVRVEEWRVKRRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELSLHE 612          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 78/235 (33.19%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   41 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            +L +   +  +M+++ RD E WM               YE+ +W    G +E  L+  LP+ LR+ IKR+LCL L+KKVP F           C R++ ++Y++   I+REG+PV  M+FI+RG +    +     G   +  L  G F GD LL+W L  P   + P SS T   +  +E F L A +L+++   +R +  +++L+   R+ S  W+TWAA  IQ AW+R+  R
Sbjct:  397 YLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYR-RLHSKQLRHMFRFYSVQWQTWAACFIQAAWKRHCRR 628          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.198e-26
Identity = 74/238 (31.09%), Postives = 119/238 (50.00%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            V+ +L +   +  +M+ + RD E WM               +E  +W    G +E  L++ LP+ LR   KRYL L L+KKVPL            C R++ + Y++   I+REG+PV  M+FI+RG +    +     G   +  L  G   GD LL+W L      + P SS T   +  +E F + A +L+++   +R +  +++L+   R+ S  W+TWAA  IQ AW+R+  R
Sbjct:  352 VQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRTVQALTEVEGFVISADDLKFVATQYR-RLHSKQLQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 73/239 (30.54%), Postives = 116/239 (48.54%), Query Frame = 2
Query:   32 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFH-XXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSV--LEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            V+ +L +   +  +M+ + RD E WM               +E  +W    G +E  L++ LP+ LR   KRYL LD++K+VP  +           CDRV+ + Y  +  I+REG PV  M+ + RG++K      +  V  +   L+ G   G+ L +         RLP S+ T   +  +E F L   ++++I  H    F  ++L+RT R  S  WR+WAA  IQ AWR++  R
Sbjct:  352 VQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLNV-FQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKR 582          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 77/243 (31.69%), Postives = 116/243 (47.74%), Query Frame = 2
Query:   41 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID------RLPA----SSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            FL A+  +  +M LR RD+E WM                ER  WA   G +E  L +++P+ L+R I+R+L    +KKV +F            +R++   Y     ++  G  V +MVFIVRG +   +S+ +      + E G   G+ELL+WCL R  ++      R+P+    SS    C+ ++EAF L   +L  +T  F     + R++   RY S  WR  AA  IQ AWR  R R
Sbjct:  514 FLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEM---ESIGEDGSVLPLYE-GDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRR 751          
BLAST of DR403360 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.284e-22
Identity = 75/241 (31.12%), Postives = 114/241 (47.30%), Query Frame = 2
Query:   41 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID----RLP----ASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYCSSNWRTWAAVNIQFAWRRYRMR 739
            FL ++  ++ +M LR RD+E WM                ER  WA   G +E  L +++P+ L+R I+R+L    +KKV +F            +R++   Y +   ++     V +MVFIVRG ++       G V    L  G   G+ELL+WCL     D    ++P     S+    C+ ++EAF L   +L  +T  F     + R++   RY S  WR  AA+ IQ AW RYR R
Sbjct:  481 FLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESIG--EDGSVLP--LSEGDVCGEELLTWCLSSINPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAW-RYRKR 715          
The following BLAST results are available for this feature:
BLAST of DR403360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC5_ARATH1.733e-3934.58Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG17_ARATH6.587e-3934.87Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG16_ARATH6.165e-3734.87Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG15_ARATH1.052e-3634.03Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG18_ARATH3.166e-3330.74Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC3_ARATH7.799e-3233.19Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG11_ARATH2.198e-2631.09Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG12_ARATH6.395e-2630.54Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG20_ARATH5.985e-2431.69Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNG19_ARATH3.284e-2231.12Putative cyclic nucleotide-gated ion channel 19 OS... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403360 ID=DR403360; Name=DR403360; organism=Citrus sinensis; type=EST; length=773bp
GGGGACTCTAATAAGTTAAATTGCTGTTGCTGTGAAGGTGTTTTTGCATG
CTGTAATGGCAAAAAAGCGAAAGATGCAGCTGAGGTGCCGAGACATGGAA
TGGTGGATGAGACGGAGGCAGCTGCCGTCGCGTTTGAGACAGAGAGTTCG
CCATTATGAGCGTCAAAGATGGGCAACAATGGGAGGAGAAGATGAGATGG
AACTGATCAAAGACTTGCCGGAAGGGCTGAGGCGTGGCATTAAACGGTAT
CTCTGCCTTGATCTTATAAAAAAGGTACCTTTGTTCCACAACCTGGATGA
TCTCATTCTTGACAACATATGTGACAGAGTTAGGCCCCTTGTATACTCTA
AAGATGAAAAGATAATCAGAGAAGGGGATCCTGTGCCAAGAATGGTGTTC
ATTGTTCGTGGACGGATTAAACGTTGCCAAAGCCTAAGCAAAGGCATGGT
AGCAACAAGTGTGCTTGAACCAGGAGGGTTTCTGGGTGATGAGTTGCTTT
CCTGGTGCCTGCGCCGCCCGTTTATCGATCGGCTGCCAGCATCATCAGCA
ACATTTTTTTGTATGGAATCCATAGAAGCATTTGGGTTAGATGCAAAGAA
TCTCCGATACATCACAGATCATTTCCGGTACAAATTTGCCAACGAAAGGC
TGAAGAGAACCGCGAGATATTGTTCATCAAATTGGAGGACATGGGCGGCT
GTGAATATTCAATTTGCTTGGAGAAGATACAGGATGAGGACTAGAGGTCC
TGTGATTTCTGTAACTGAACATG
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