DR403359

Overview
NameDR403359
Unique NameDR403359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length136
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:266..401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.813e-18
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACLEQDP+S+VACETCTKTN+V
Sbjct:    7 TSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMV 51          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.798e-18
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQ+SDA LDACLEQDP+S+VACETCTKTN+V
Sbjct:    7 TSESVNEGHPDKLCDQVSDAILDACLEQDPDSKVACETCTKTNMV 51          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL QDPES+VACETCTKTN+V
Sbjct:   11 TSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLV 55          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQ+SDA LDACLEQDPES+VACETC+KTN+V
Sbjct:    7 TSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCSKTNMV 51          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL QDPES+VACETCTKTN+V
Sbjct:   11 TSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLV 55          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL+QDP+S+VACETCTKTN+V
Sbjct:    7 TSESVNEGHPDKLCDQISDAVLDACLQQDPDSKVACETCTKTNMV 51          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL QDPES+VACETCTKTN+V
Sbjct:    7 TSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNMV 51          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL QDPES+VACETCTKTN+V
Sbjct:   11 TSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLV 55          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.266e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQISDA LDACL QDPES+VACETCTKTN+V
Sbjct:   11 TSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLV 55          
BLAST of DR403359 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.184e-18
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 TSESVNQGHPDKLCDQISDAALDACLEQDPESEVACETCTKTNVV 135
            TSESVN+GHPDKLCDQ+SDA LDACL QDPES+VACETCTKTN+V
Sbjct:    7 TSESVNEGHPDKLCDQVSDAVLDACLAQDPESKVACETCTKTNLV 51          
The following BLAST results are available for this feature:
BLAST of DR403359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
METK1_ARATH2.813e-1888.89S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK2_POPTR4.798e-1886.67S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK4_ATRNU6.266e-1888.89S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK3_VITVI6.266e-1886.67S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_ATRNU6.266e-1888.89S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK2_VITVI6.266e-1886.67S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK2_CATRO6.266e-1888.89S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]
METK2_ATRNU6.266e-1888.89S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU6.266e-1888.89S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK2_SOLLC8.184e-1886.67S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L16 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403359 ID=DR403359; Name=DR403359; organism=Citrus sinensis; type=EST; length=136bp
ACCTCTGAATCTGTGAACCAGGGTCACCCCGACAAGTTGTGCGACCAGAT
CTCTGATGCCGCGCTTGATGCCTGCCTTGAGCAGGATCCTGAAAGCGAGG
TTGCCTGTGAGACATGCACCAAGACCAACGTGGTCA
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