DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SOLLC (Photosystem II reaction center protein H OS=Solanum lycopersicum GN=psbH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SOLBU (Photosystem II reaction center protein H OS=Solanum bulbocastanum GN=psbH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_NICTO (Photosystem II reaction center protein H OS=Nicotiana tomentosiformis GN=psbH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_NICSY (Photosystem II reaction center protein H OS=Nicotiana sylvestris GN=psbH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ATRBE (Photosystem II reaction center protein H OS=Atropa belladonna GN=psbH PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_POPDE (Photosystem II reaction center protein H OS=Populus deltoides GN=psbH PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ+VEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQSVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_POPAL (Photosystem II reaction center protein H OS=Populus alba GN=psbH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ+VEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQSVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_NYMAL (Photosystem II reaction center protein H OS=Nymphaea alba GN=psbH PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT+EGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGISL+
Sbjct:    1 MATQTIEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISLS 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_MORIN (Photosystem II reaction center protein H OS=Morus indica GN=psbH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+  +RTS G LLKPLNSEYGKVAPGWGTTPLMG+AMALFA+FLSII EIYNSS+LLDGIS+N
Sbjct:    1 MATQTVEGSSRSGSRRTSVGNLLKPLNSEYGKVAPGWGTTPLMGIAMALFAIFLSIILEIYNSSILLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_JASNU (Photosystem II reaction center protein H OS=Jasminum nudiflorum GN=psbH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+RPK T  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVETSSRSRPKPTIVGSLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_SOLLC4.071e-2987.67Photosystem II reaction center protein H OS=Solanu... [more]
PSBH_SOLBU4.071e-2987.67Photosystem II reaction center protein H OS=Solanu... [more]
PSBH_NICTO4.071e-2987.67Photosystem II reaction center protein H OS=Nicoti... [more]
PSBH_NICSY4.071e-2987.67Photosystem II reaction center protein H OS=Nicoti... [more]
PSBH_ATRBE4.071e-2987.67Photosystem II reaction center protein H OS=Atropa... [more]
PSBH_POPDE5.317e-2987.67Photosystem II reaction center protein H OS=Populu... [more]
PSBH_POPAL5.317e-2987.67Photosystem II reaction center protein H OS=Populu... [more]
PSBH_NYMAL5.317e-2987.67Photosystem II reaction center protein H OS=Nympha... [more]
PSBH_MORIN5.317e-2984.93Photosystem II reaction center protein H OS=Morus ... [more]
PSBH_JASNU5.317e-2989.04Photosystem II reaction center protein H OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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