DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_GUITH (Photosystem II reaction center protein H OS=Guillardia theta GN=psbH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G LL+PLNSEYGKVAPGWGTTP MG  M LF +FL II +IYNSS++L+ + ++
Sbjct:    4 RTRLGELLRPLNSEYGKVAPGWGTTPAMGFVMLLFFLFLLIILQIYNSSLILENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_THAPS (Photosystem II reaction center protein H OS=Thalassiosira pseudonana GN=psbH PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLN+EYGKV PGWGTTP+MG+ M LF VFL II +IYNSS++++ + ++
Sbjct:    4 RTRLGEILRPLNAEYGKVVPGWGTTPIMGLTMVLFLVFLLIILQIYNSSLIIENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PHATR (Photosystem II reaction center protein H OS=Phaeodactylum tricornutum GN=psbH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G LL+PLN+EYGKVAPGWGTTP+M V M  F VFL II +IYNSS++++ + ++
Sbjct:    4 RTRLGELLRPLNAEYGKVAPGWGTTPIMAVVMGAFLVFLLIILQIYNSSLIIENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_NOSP7 (Photosystem II reaction center protein H OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psbH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGI 261
            +RT  G +LKPLNSEYGKVAPGWGTTP+M V MALF VFL II ++YN S+L+  +
Sbjct:    3 QRTRLGDILKPLNSEYGKVAPGWGTTPVMAVFMALFFVFLLIILQLYNRSLLVQDV 58          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SCEOB (Photosystem II reaction center protein H OS=Scenedesmus obliquus GN=psbH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  100 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            T  G LL+PLNSE GKV PGWGTT LMGV + LFAVFL II EIYNSS+LLD ++++
Sbjct:   24 TPLGTLLRPLNSESGKVLPGWGTTVLMGVFIVLFAVFLLIILEIYNSSLLLDDVTMS 80          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_OSTTA (Photosystem II reaction center protein H OS=Ostreococcus tauri GN=psbH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            K T+ G  L+PLNSEYGKVAPGWGTT LM V + LFAVF+ I+ EIYN S++LD + +N
Sbjct:   13 KVTALGTALRPLNSEYGKVAPGWGTTILMSVFIGLFAVFIVILLEIYNKSLILDNVGVN 71          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CHLRE (Photosystem II reaction center protein H OS=Chlamydomonas reinhardtii GN=psbH PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   73 GSSRARPKR-----------TSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            G+S+A+P +           T  G LL+PLNSE GKV PGWGTT LM V + LFA FL II EIYNSS++LD +S++
Sbjct:    4 GTSKAKPSKVNSDFQEPGLVTPLGTLLRPLNSEAGKVLPGWGTTVLMAVFILLFAAFLLIILEIYNSSLILDDVSMS 80          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_TRIEI (Photosystem II reaction center protein H OS=Trichodesmium erythraeum (strain IMS101) GN=psbH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +LKPLNSEYGKV+PGWGTT +M V + LF VFL II +IYNSS+LL+ + ++
Sbjct:    3 QRTGLGDILKPLNSEYGKVSPGWGTTWVMAVFIGLFFVFLLIILQIYNSSLLLENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_BIGNA (Photosystem II reaction center protein H OS=Bigelowiella natans GN=psbH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   52 MATQT-VEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISL 267
            MAT+T V+ +       T  G LLKPLNSEYGKV+ GWGTT +M + M+LFAVFL+II EIYN S++L  ++L
Sbjct:    1 MATKTTVQKAIDTTSTVTPLGTLLKPLNSEYGKVSIGWGTTGVMAIFMSLFAVFLTIILEIYNGSLILTDVTL 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_GLOVI (Photosystem II reaction center protein H OS=Gloeobacter violaceus GN=psbH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGIS 264
            +RT  G  LKPLNSE GK +PGWGTTP+MG  +ALF VFL II +I N+S+LL+G++
Sbjct:    3 RRTWLGDRLKPLNSEIGKASPGWGTTPIMGALIALFGVFLIIILQIANNSLLLEGVN 59          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_GUITH9.735e-1563.79Photosystem II reaction center protein H OS=Guilla... [more]
PSBH_THAPS1.271e-1458.62Photosystem II reaction center protein H OS=Thalas... [more]
PSBH_PHATR2.169e-1460.34Photosystem II reaction center protein H OS=Phaeod... [more]
PSBH_NOSP72.169e-1466.07Photosystem II reaction center protein H OS=Nostoc... [more]
PSBH_SCEOB2.832e-1468.42Photosystem II reaction center protein H OS=Scened... [more]
PSBH_OSTTA2.832e-1462.71Photosystem II reaction center protein H OS=Ostreo... [more]
PSBH_CHLRE8.241e-1453.25Photosystem II reaction center protein H OS=Chlamy... [more]
PSBH_TRIEI1.076e-1361.02Photosystem II reaction center protein H OS=Tricho... [more]
PSBH_BIGNA1.836e-1356.16Photosystem II reaction center protein H OS=Bigelo... [more]
PSBH_GLOVI3.132e-1361.40Photosystem II reaction center protein H OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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