DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_GOSHI (Photosystem II reaction center protein H OS=Gossypium hirsutum GN=psbH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+ P+RT  G  LKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVEGSSRSGPRRTVVGDFLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_GOSBA (Photosystem II reaction center protein H OS=Gossypium barbadense GN=psbH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+ P+RT  G  LKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVEGSSRSGPRRTVVGDFLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_DAUCA (Photosystem II reaction center protein H OS=Daucus carota GN=psbH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE  SR+RPK T+ GGLLKPLNSEYGKVAPGWGT PLMGVAMALFA+FLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENVSRSRPKPTTVGGLLKPLNSEYGKVAPGWGTAPLMGVAMALFAIFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_COFAR (Photosystem II reaction center protein H OS=Coffea arabica GN=psbH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTV+ SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVDNSSRSGPRRTTVGSLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_WHEAT (Photosystem II reaction center protein H OS=Triticum aestivum GN=psbH PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SS+ RPKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSKPRPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SORBI (Photosystem II reaction center protein H OS=Sorghum bicolor GN=psbH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR +PKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSRPKPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SECCE (Photosystem II reaction center protein H OS=Secale cereale GN=psbH PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SS+ RPKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSKPRPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SACOF (Photosystem II reaction center protein H OS=Saccharum officinarum GN=psbH PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR +PKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSRPKPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SACHY (Photosystem II reaction center protein H OS=Saccharum hybrid GN=psbH PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR +PKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSRPKPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73
[Close]
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PHAAO (Photosystem II reaction center protein H OS=Phalaenopsis aphrodite subsp. formosana GN=psbH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+T+E SSR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATKTIESSSRSGPRRTGVGSLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGISIN 73
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_GOSHI6.944e-2986.30Photosystem II reaction center protein H OS=Gossyp... [more]
PSBH_GOSBA6.944e-2986.30Photosystem II reaction center protein H OS=Gossyp... [more]
PSBH_DAUCA6.944e-2986.30Photosystem II reaction center protein H OS=Daucus... [more]
PSBH_COFAR6.944e-2986.30Photosystem II reaction center protein H OS=Coffea... [more]
PSBH_WHEAT2.020e-2886.30Photosystem II reaction center protein H OS=Tritic... [more]
PSBH_SORBI2.020e-2886.30Photosystem II reaction center protein H OS=Sorghu... [more]
PSBH_SECCE2.020e-2886.30Photosystem II reaction center protein H OS=Secale... [more]
PSBH_SACOF2.020e-2886.30Photosystem II reaction center protein H OS=Saccha... [more]
PSBH_SACHY2.020e-2886.30Photosystem II reaction center protein H OS=Saccha... [more]
PSBH_PHAAO2.020e-2883.56Photosystem II reaction center protein H OS=Phalae... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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