DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_MAIZE (Photosystem II reaction center protein H OS=Zea mays GN=psbH PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR +PKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSRPKPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_HELAN (Photosystem II reaction center protein H OS=Helianthus annuus GN=psbH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE  S++ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENGSKSGPRRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_AGRST (Photosystem II reaction center protein H OS=Agrostis stolonifera GN=psbH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SS+ RPKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGI  N
Sbjct:    1 MATQTVEDSSKPRPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGILTN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_LIRTU (Photosystem II reaction center protein H OS=Liriodendron tulipifera GN=psbH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGIS++
Sbjct:    1 MATQTVEGSSRSGPRRTITGDLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGISMS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_LACSA (Photosystem II reaction center protein H OS=Lactuca sativa GN=psbH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE  +R+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVENGARSGPRRTTVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_HORVU (Photosystem II reaction center protein H OS=Hordeum vulgare GN=psbH PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SS+ RPKRT AG LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSS+LLDGI  N
Sbjct:    1 MATQTVEDSSKPRPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSILLDGILTN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SOYBN (Photosystem II reaction center protein H OS=Glycine max GN=psbH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE +SR+ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSS+LLDGIS+N
Sbjct:    1 MATQTVEDNSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSILLDGISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PANGI (Photosystem II reaction center protein H OS=Panax ginseng GN=psbH PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE  SR+RPK T+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLD IS+N
Sbjct:    1 MATQTVENGSRSRPKPTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDEISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ARATH (Photosystem II reaction center protein H OS=Arabidopsis thaliana GN=psbH PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.501e-28
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+ T+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII EIYNSSVLLDGIS+N
Sbjct:    1 MATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CALFG (Photosystem II reaction center protein H OS=Calycanthus floridus var. glaucus GN=psbH PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.879e-28
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGIS 264
            MATQTVEGSSR+ P+RT  G LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGIS
Sbjct:    1 MATQTVEGSSRSGPRRTLTGDLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGIS 71          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_MAIZE2.020e-2886.30Photosystem II reaction center protein H OS=Zea ma... [more]
PSBH_HELAN2.020e-2884.93Photosystem II reaction center protein H OS=Helian... [more]
PSBH_AGRST2.020e-2886.30Photosystem II reaction center protein H OS=Agrost... [more]
PSBH_LIRTU2.639e-2884.93Photosystem II reaction center protein H OS=Liriod... [more]
PSBH_LACSA2.639e-2884.93Photosystem II reaction center protein H OS=Lactuc... [more]
PSBH_HORVU2.639e-2884.93Photosystem II reaction center protein H OS=Hordeu... [more]
PSBH_SOYBN4.501e-2883.56Photosystem II reaction center protein H OS=Glycin... [more]
PSBH_PANGI4.501e-2884.93Photosystem II reaction center protein H OS=Panax ... [more]
PSBH_ARATH4.501e-2886.30Photosystem II reaction center protein H OS=Arabid... [more]
PSBH_CALFG5.879e-2887.32Photosystem II reaction center protein H OS=Calyca... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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