DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PELHO (Photosystem II reaction center protein H OS=Pelargonium hortorum GN=psbH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.678e-28
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ+VE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGI +N
Sbjct:    1 MATQSVEDSSRSGPRRTNVGSLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGILMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PEA (Photosystem II reaction center protein H OS=Pisum sativum GN=psbH PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.003e-27
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR+ P+RT+ G LLKPLNSEYGKVAPGWGTTPLMG+AMALFAVFLSII EIYNSS+LLD IS+N
Sbjct:    1 MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ORYSJ (Photosystem II reaction center protein H OS=Oryza sativa subsp. japonica GN=psbH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR  P++T  G LLKPLNSEYGKVAPGWGTTP MGVAMALFAVFLSII EIYNSSVLLDGI +N
Sbjct:    1 MATQTVEDSSRPGPRQTRVGNLLKPLNSEYGKVAPGWGTTPFMGVAMALFAVFLSIILEIYNSSVLLDGILMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ORYSI (Photosystem II reaction center protein H OS=Oryza sativa subsp. indica GN=psbH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR  P++T  G LLKPLNSEYGKVAPGWGTTP MGVAMALFAVFLSII EIYNSSVLLDGI +N
Sbjct:    1 MATQTVEDSSRPGPRQTRVGNLLKPLNSEYGKVAPGWGTTPFMGVAMALFAVFLSIILEIYNSSVLLDGILMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ORYSA (Photosystem II reaction center protein H OS=Oryza sativa GN=psbH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR  P++T  G LLKPLNSEYGKVAPGWGTTP MGVAMALFAVFLSII EIYNSSVLLDGI +N
Sbjct:    1 MATQTVEDSSRPGPRQTRVGNLLKPLNSEYGKVAPGWGTTPFMGVAMALFAVFLSIILEIYNSSVLLDGILMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ORYNI (Photosystem II reaction center protein H OS=Oryza nivara GN=psbH PE=3 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 4.977e-27
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTVE SSR  P++T  G LLKPLNSEYGKVAPGWGTTP MGVAMALFAVFLSII EIYNSSVLLDGI +N
Sbjct:    1 MATQTVEDSSRPGPRQTRVGNLLKPLNSEYGKVAPGWGTTPFMGVAMALFAVFLSIILEIYNSSVLLDGILMN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PIPCE (Photosystem II reaction center protein H OS=Piper cenocladum GN=psbH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.109e-26
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGI 261
            MATQTVE SS++ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAMALFA+FLSII EIYNSSVLLDGI
Sbjct:    1 MATQTVEDSSKSGPRRTVIGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSVLLDGI 70          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_AMBTC (Photosystem II reaction center protein H OS=Amborella trichopoda GN=psbH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            M TQ+VE SSR+ P+RT  G LLKPLNSEYGKVAPGWGTTP MGVAMALFA+FLSII EIYNSSVLLDGIS++
Sbjct:    1 MVTQSVEDSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPFMGVAMALFAIFLSIILEIYNSSVLLDGISVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CUCSA (Photosystem II reaction center protein H OS=Cucumis sativus GN=psbH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.470e-26
Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTV+ SS++ P+RT  G LLKPLNSEYGKVAPGWGTTPLMGVAM+LFA+FL II EIYNSS+LLDGIS N
Sbjct:    1 MATQTVDDSSKSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMSLFAIFLCIILEIYNSSILLDGISSN 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PINTH (Photosystem II reaction center protein H OS=Pinus thunbergii GN=psbH PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.038e-24
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT++ +S+  PK T  G  LKPLNSEYGKVAPGWGTTPLMG AMALFAVFLSII EIYNSSVLLDGI ++
Sbjct:    1 MATQTIDDTSKTTPKETLVGTTLKPLNSEYGKVAPGWGTTPLMGFAMALFAVFLSIILEIYNSSVLLDGIPVS 73          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_PELHO7.678e-2883.56Photosystem II reaction center protein H OS=Pelarg... [more]
PSBH_PEA1.003e-2783.56Photosystem II reaction center protein H OS=Pisum ... [more]
PSBH_ORYSJ4.977e-2783.56Photosystem II reaction center protein H OS=Oryza ... [more]
PSBH_ORYSI4.977e-2783.56Photosystem II reaction center protein H OS=Oryza ... [more]
PSBH_ORYSA4.977e-2783.56Photosystem II reaction center protein H OS=Oryza ... [more]
PSBH_ORYNI4.977e-2783.56Photosystem II reaction center protein H OS=Oryza ... [more]
PSBH_PIPCE1.109e-2685.71Photosystem II reaction center protein H OS=Piper ... [more]
PSBH_AMBTC1.891e-2680.82Photosystem II reaction center protein H OS=Ambore... [more]
PSBH_CUCSA2.470e-2679.45Photosystem II reaction center protein H OS=Cucumi... [more]
PSBH_PINTH1.038e-2476.71Photosystem II reaction center protein H OS=Pinus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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