DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_WELMI (Photosystem II reaction center protein H OS=Welwitschia mirabilis GN=psbH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.019e-24
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQTV  +SR RP+RT  G  LKPLNSEYGKVAPGWGTTPLMG  M LFA+FLS++ EIYNSS+LL+GIS++
Sbjct:    1 MATQTVNETSRTRPRRTGIGSYLKPLNSEYGKVAPGWGTTPLMGFFMVLFAIFLSLLLEIYNSSILLNGISVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PINKO (Photosystem II reaction center protein H OS=Pinus koraiensis GN=psbH PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.436e-23
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT++ +S+  P+ T  G  LKPLNSEYGKVAPGWGTT LMG  MALFAVFLSII EIYNSSVLLDGI ++
Sbjct:    1 MATQTIDDTSKITPRETRVGTSLKPLNSEYGKVAPGWGTTALMGFTMALFAVFLSIILEIYNSSVLLDGIPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ANTFO (Photosystem II reaction center protein H OS=Anthoceros formosae GN=psbH PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 9.712e-23
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ ++ + + + +R+  G +LKPLNSEYGKVAPGWGTTPLMG+AM LFAVFL II E+YNSSVLLDG+S++
Sbjct:    1 MATQIIDDTPKTKGRRSGIGNILKPLNSEYGKVAPGWGTTPLMGIAMGLFAVFLVIILELYNSSVLLDGVSVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PHYPA (Photosystem II reaction center protein H OS=Physcomitrella patens GN=psbH PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.657e-22
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ ++ + + + KR+  G +LKPLNSEYGKVAPGWGTTPLMGVAM LFAVFL II E+YNSSVLLDG+ ++
Sbjct:    1 MATQIIDDTPKTKGKRSGLGDILKPLNSEYGKVAPGWGTTPLMGVAMGLFAVFLVIILELYNSSVLLDGVPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_MARPO (Photosystem II reaction center protein H OS=Marchantia polymorpha GN=psbH PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ ++ + + + K++  G +LKPLNSEYGKVAPGWGTTPLMG+ MALFAVFL +I E+YNSSVLLDG+S++
Sbjct:    1 MATQIIDDTPKTKGKKSGIGDILKPLNSEYGKVAPGWGTTPLMGIMMALFAVFLVVILELYNSSVLLDGVSVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CHAVU (Photosystem II reaction center protein H OS=Chara vulgaris GN=psbH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ VE + +++ +RT  G +LKPLNSEYGKVAPGWGTT LMG+ MALFAVFL II EIYN+SVLLDGIS++
Sbjct:    1 MATQIVEDTIKSKGRRTDVGDILKPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNASVLLDGISVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PSINU (Photosystem II reaction center protein H OS=Psilotum nudum GN=psbH PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+  + + RA+PK++  G  LKPLNSEYG+VAPGWGTTPLMG  MALFA+FL II EIYNSSVLLDG+S++
Sbjct:    1 MATKIFDDALRAKPKQSGLGVFLKPLNSEYGRVAPGWGTTPLMGFFMALFAIFLVIILEIYNSSVLLDGLSIS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CHAGL (Photosystem II reaction center protein H OS=Chaetosphaeridium globosum GN=psbH PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+T++ S + + +R++ G +LKPLNSEYGKVAPGWGTT LMGV MALFAVFL II EIYNSSVLLDGI ++
Sbjct:    1 MATKTIDNSIKLKGRRSAVGDILKPLNSEYGKVAPGWGTTVLMGVFMALFAVFLVIILEIYNSSVLLDGIPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_COLOB (Photosystem II reaction center protein H OS=Coleochaete orbicularis GN=psbH PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+T+  +S+ + +RTS G +LKPLNSEYGKVAPGWGTT LMGV +ALFAVFL II E+YN+SVLLDGI ++
Sbjct:    1 MATRTINNTSQTKGRRTSVGDVLKPLNSEYGKVAPGWGTTVLMGVFIALFAVFLVIILELYNASVLLDGIPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ZYGCR (Photosystem II reaction center protein H OS=Zygnema circumcarinatum GN=psbH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQT++ +S ++ ++TS G +LKPLNSEYGKVAPGWGTT LM V MALFAVFL II E+YN+SVLLDG++++
Sbjct:    1 MATQTIKQTSTSKGRQTSVGDILKPLNSEYGKVAPGWGTTVLMAVFMALFAVFLVIILELYNASVLLDGLAVS 73          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_WELMI3.019e-2472.60Photosystem II reaction center protein H OS=Welwit... [more]
PSBH_PINKO7.436e-2372.60Photosystem II reaction center protein H OS=Pinus ... [more]
PSBH_ANTFO9.712e-2367.12Photosystem II reaction center protein H OS=Anthoc... [more]
PSBH_PHYPA1.657e-2268.49Photosystem II reaction center protein H OS=Physco... [more]
PSBH_MARPO2.164e-2265.75Photosystem II reaction center protein H OS=Marcha... [more]
PSBH_CHAVU2.164e-2271.23Photosystem II reaction center protein H OS=Chara ... [more]
PSBH_PSINU6.295e-2268.49Photosystem II reaction center protein H OS=Psilot... [more]
PSBH_CHAGL6.295e-2269.86Photosystem II reaction center protein H OS=Chaeto... [more]
PSBH_COLOB1.074e-2168.49Photosystem II reaction center protein H OS=Coleoc... [more]
PSBH_ZYGCR2.392e-2167.12Photosystem II reaction center protein H OS=Zygnem... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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