DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ADICA (Photosystem II reaction center protein H OS=Adiantum capillus-veneris GN=psbH PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+ ++ + + +PK +  G +LKPLNSEYGKVAPGWGTTPLMG  MALFA+FL  I EIYNSSVLLDGI+++
Sbjct:    1 MATKVLDETPKGKPKISFLGMVLKPLNSEYGKVAPGWGTTPLMGFFMALFAIFLVTILEIYNSSVLLDGIAIS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_HUPLU (Photosystem II reaction center protein H OS=Huperzia lucidula GN=psbH PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ  + S R + K T  G  LKPLNSEYGKVAPGWGTTP+MGVAMA FAVF  II E+YNSSV LDGI ++
Sbjct:    1 MATQISDISRRTKVKSTGLGNALKPLNSEYGKVAPGWGTTPIMGVAMASFAVFSVIILELYNSSVSLDGIPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SPIMX (Photosystem II reaction center protein H OS=Spirogyra maxima GN=psbH PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*NEI 282
            MAT+  +       K+TS G +LKPLNSEYGKVAPGWGTT LMGV MALFAVFL II EIYN+SVLLDGI ++ N +
Sbjct:    1 MATKINDDILSTPGKKTSVGDILKPLNSEYGKVAPGWGTTVLMGVFMALFAVFLVIILEIYNASVLLDGIPVSWNSL 77          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_STAPU (Photosystem II reaction center protein H OS=Staurastrum punctulatum GN=psbH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MATQ ++ ++ ++ +RT+ G +LKPLNSEYGKVAPGWGTT LMGV MALFAVFL II E+YN+SV+LDGI ++
Sbjct:    1 MATQIIKDAN-SKGRRTALGDILKPLNSEYGKVAPGWGTTVLMGVFMALFAVFLVIILELYNASVVLDGIPVS 72          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_MESVI (Photosystem II reaction center protein H OS=Mesostigma viride GN=psbH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*NEIYK 288
            KRT  G  LKPLNSEYGKVAPGWGTT LMGV MALFAVFL II +IYN+SVLLDGI  N + + K
Sbjct:    8 KRTVVGNFLKPLNSEYGKVAPGWGTTVLMGVFMALFAVFLVIILQIYNASVLLDGIPANWSSLSK 72          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_KLEBI (Photosystem II reaction center protein H OS=Klebsormidium bilatum GN=psbH PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.407e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            MAT+T++     +    +   +LKPLN+EYGKVAPGWGTT LMGV MALFAVFL II E+YN+SVLLDG+ ++
Sbjct:    1 MATKTLDQDPNKQRPGAAVSSVLKPLNAEYGKVAPGWGTTVLMGVFMALFAVFLVIILELYNASVLLDGVPVS 73          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNR3 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain RCC307) GN=psbH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.605e-17
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ MALF VFL +I ++YN S+LLDGI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMALFLVFLLVILQLYNRSLLLDGITVNWN 63          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CHLVU (Photosystem II reaction center protein H OS=Chlorella vulgaris GN=psbH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.605e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  100 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*NEIYK 288
            T  G LLKPLNSEYGKVAPGWGTT LMG+ MALFAVFL II EIYNSSVLLD ++++   + K
Sbjct:   18 TPLGTLLKPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVLLDDVTMSWESLSK 80          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNP2 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psbH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.096e-17
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +LKPLNSEYGKVAPGWGTTPLMGV MALF VFL II +IYNSS++L+G  ++
Sbjct:    3 QRTRLGDILKPLNSEYGKVAPGWGTTPLMGVFMALFLVFLLIILQIYNSSLILEGFEVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNS3 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain CC9311) GN=psbH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.669e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ MALF VFL II ++YN S++L+GI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMALFLVFLLIILQLYNKSLILEGINVNWN 63          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_ADICA1.551e-2065.75Photosystem II reaction center protein H OS=Adiant... [more]
PSBH_HUPLU4.512e-2068.49Photosystem II reaction center protein H OS=Huperz... [more]
PSBH_SPIMX5.892e-2066.23Photosystem II reaction center protein H OS=Spirog... [more]
PSBH_STAPU1.714e-1965.75Photosystem II reaction center protein H OS=Staura... [more]
PSBH_MESVI6.515e-1973.85Photosystem II reaction center protein H OS=Mesost... [more]
PSBH_KLEBI9.407e-1860.27Photosystem II reaction center protein H OS=Klebso... [more]
PSBH_SYNR31.605e-1767.21Photosystem II reaction center protein H OS=Synech... [more]
PSBH_CHLVU1.605e-1771.43Photosystem II reaction center protein H OS=Chlore... [more]
PSBH_SYNP22.096e-1771.19Photosystem II reaction center protein H OS=Synech... [more]
PSBH_SYNS34.669e-1765.57Photosystem II reaction center protein H OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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