DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4274 contig Csv1_Contig4274:563..1172. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PSEAK (Photosystem II reaction center protein H OS=Pseudendoclonium akinetum GN=psbH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.098e-17
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*NEIYK 288
            MAT+T + S+      T+ G LL+PLNSEYGKVAPGWGT  LMGV MALFAVFL II EIYNSSV+LD + ++   + K
Sbjct:    1 MATKTSK-STDDLGMTTALGTLLRPLNSEYGKVAPGWGTATLMGVFMALFAVFLVIILEIYNSSVILDDVQMSWQSLAK 78          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_THEEB (Photosystem II reaction center protein H OS=Thermosynechococcus elongatus (strain BP-1) GN=psbH PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +L+PLNSEYGKVAPGWGTTPLM V M LF VFL II EIYNS+++LDG++++
Sbjct:    3 RRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVS 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNY3 (Photosystem II reaction center protein H OS=Synechocystis sp. (strain PCC 6803) GN=psbH PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +L+PLNSEYGKV PGWGTTP+MGV MALF VFL II +IYNSS++L+G S++
Sbjct:    3 QRTRLGDILRPLNSEYGKVVPGWGTTPVMGVFMALFLVFLLIILQIYNSSLILEGFSVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_NEPOL (Photosystem II reaction center protein H OS=Nephroselmis olivacea GN=psbH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            K T  G  LKPLNSEYGKVAPGWGTTP+MG+ MALFAVFL II EIYNSS++LD + ++
Sbjct:   17 KITPLGTALKPLNSEYGKVAPGWGTTPVMGLFMALFAVFLLIILEIYNSSLILDDVGVS 75          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAPA (Photosystem II reaction center protein H OS=Cyanophora paradoxa GN=psbH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.040e-16
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   91 PKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            P+RT+ G +L+PLNSEYGKVAPGWGTTPLM V M LF VFL II +IYNSS+LL+ + ++
Sbjct:    2 PQRTALGNILRPLNSEYGKVAPGWGTTPLMAVFMLLFFVFLLIIIQIYNSSLLLENVQVS 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNJB (Photosystem II reaction center protein H OS=Synechococcus sp. GN=psbH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G LL+PLNSEYGKVAPGWGTTPLM V MALFAVFL II +IYN S+LL+ I+++
Sbjct:    4 RTRLGDLLRPLNSEYGKVAPGWGTTPLMAVFMALFAVFLLIILQIYNKSLLLEDINVS 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAP4 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psbH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            KRT  G +LKPLNSEYGKVAPGWGT PLM V M LF VFL II E+YNS+++L+G+++N
Sbjct:    3 KRTWLGDVLKPLNSEYGKVAPGWGTAPLMAVFMGLFLVFLLIILELYNSTLMLEGVNVN 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNSC (Photosystem II reaction center protein H OS=Synechococcus sp. (strain CC9605) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ M LF VFL +I ++YN S++L+GI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMVLFLVFLLVILQLYNKSLILEGINVNWN 63          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNS9 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain CC9902) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ M LF VFL +I ++YN S++L+GI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMVLFLVFLLVILQLYNKSLILEGINVNWN 63          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNPX (Photosystem II reaction center protein H OS=Synechococcus sp. (strain WH8102) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ M LF VFL +I ++YN S++L+GI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMVLFLVFLLVILQLYNKSLILEGINVNWN 63          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_PSEAK6.098e-1760.76Photosystem II reaction center protein H OS=Pseude... [more]
PSBH_THEEB1.040e-1667.80Photosystem II reaction center protein H OS=Thermo... [more]
PSBH_SYNY31.040e-1667.80Photosystem II reaction center protein H OS=Synech... [more]
PSBH_NEPOL1.040e-1671.19Photosystem II reaction center protein H OS=Nephro... [more]
PSBH_CYAPA1.040e-1666.67Photosystem II reaction center protein H OS=Cyanop... [more]
PSBH_SYNJB1.358e-1672.41Photosystem II reaction center protein H OS=Synech... [more]
PSBH_CYAP41.358e-1667.80Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_SYNSC1.774e-1662.30Photosystem II reaction center protein H OS=Synech... [more]
PSBH_SYNS91.774e-1662.30Photosystem II reaction center protein H OS=Synech... [more]
PSBH_SYNPX1.774e-1662.30Photosystem II reaction center protein H OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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