DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNPW (Photosystem II reaction center protein H OS=Synechococcus sp. (strain WH7803) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN*N 276
            +RT  G LL+PLNSEYGKV PGWGTTP+MG+ M LF VFL +I ++YN S++L+GI++N N
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPVMGIFMVLFLVFLLVILQLYNQSLILEGINVNWN 63          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAP8 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain PCC 8801) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISL 267
            +RT  G LL+PLNSEYGKV PGWGTTPLMGV M LF VFL II +IYNSS++L+G ++
Sbjct:    3 QRTGLGDLLRPLNSEYGKVVPGWGTTPLMGVFMGLFLVFLLIILQIYNSSLILEGFTV 60          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_STIHE (Photosystem II reaction center protein H OS=Stigeoclonium helveticum GN=psbH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  100 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            T  G LLKPLNSE GKV PGWGTT LMGV MALFAVFL I+ EIYNSSV+LDG++++
Sbjct:   21 TPLGRLLKPLNSEAGKVLPGWGTTVLMGVFMALFAVFLVILLEIYNSSVILDGVTMS 77          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_OLTVI (Photosystem II reaction center protein H OS=Oltmannsiellopsis viridis GN=psbH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:  100 TSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            T+ G LL+PLNSEYGKVAPGWGTT LMG  MALFAVFL II EIYNSSVLL+ + ++
Sbjct:   14 TALGTLLRPLNSEYGKVAPGWGTTVLMGTFMALFAVFLVIILEIYNSSVLLEDVPMS 70          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAA5 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain ATCC 51142) GN=psbH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.026e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISL 267
            +RT  G LL+PLNSEYGKV PGWGTTPLMGV M LF VFL II +IYNSS++L+G ++
Sbjct:    3 QRTRLGDLLRPLNSEYGKVVPGWGTTPLMGVFMGLFLVFLLIILQIYNSSLILNGFTV 60          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNJA (Photosystem II reaction center protein H OS=Synechococcus sp. (strain JA-3-3Ab) GN=psbH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G LL+PLNSEYGKVAPGWGTTPLM V M LF +FL II +IYN S+LL+ I+++
Sbjct:    4 RTKLGDLLRPLNSEYGKVAPGWGTTPLMAVFMVLFGIFLLIILQIYNKSLLLEDINVS 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_MICAN (Photosystem II reaction center protein H OS=Microcystis aeruginosa (strain NIES-843) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +L+PLNSEYGKV+PGWGTT LMGV MALF VFL II +IYNSS++L+G +++
Sbjct:    3 QRTRLGEILRPLNSEYGKVSPGWGTTLLMGVFMALFLVFLLIILQIYNSSLILEGFNVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_EMIHU (Photosystem II reaction center protein H OS=Emiliania huxleyi GN=psbH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLN+EYGKVAPGWGTTP+MGV M LF VFL II +IYNSS++L+ + ++
Sbjct:    4 RTRLGEILRPLNAEYGKVAPGWGTTPVMGVFMGLFLVFLVIILQIYNSSIILENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNP6 (Photosystem II reaction center protein H OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLD 255
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV M LF VFL II +IYNSS++LD
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMLLFFVFLLIILQIYNSSLVLD 56          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_SYNE7 (Photosystem II reaction center protein H OS=Synechococcus elongatus (strain PCC 7942) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLD 255
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV M LF VFL II +IYNSS++LD
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMLLFFVFLLIILQIYNSSLVLD 56          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_SYNPW1.774e-1662.30Photosystem II reaction center protein H OS=Synech... [more]
PSBH_CYAP81.774e-1668.97Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_STIHE3.026e-1673.68Photosystem II reaction center protein H OS=Stigeo... [more]
PSBH_OLTVI3.026e-1673.68Photosystem II reaction center protein H OS=Oltman... [more]
PSBH_CYAA53.026e-1668.97Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_SYNJA1.150e-1567.24Photosystem II reaction center protein H OS=Synech... [more]
PSBH_MICAN1.502e-1566.10Photosystem II reaction center protein H OS=Microc... [more]
PSBH_EMIHU1.502e-1563.79Photosystem II reaction center protein H OS=Emilia... [more]
PSBH_SYNP61.962e-1572.22Photosystem II reaction center protein H OS=Synech... [more]
PSBH_SYNE71.962e-1572.22Photosystem II reaction center protein H OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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