DR403354

Overview
NameDR403354
Unique NameDR403354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAP7 (Photosystem II reaction center protein H OS=Cyanothece sp. (strain PCC 7424) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +RT  G +L+PLNSEYGKVAPGWGTT LMGV M LF VFL II +IYNSS+LL+G  ++
Sbjct:    3 QRTWLGDILRPLNSEYGKVAPGWGTTGLMGVFMLLFFVFLLIILQIYNSSLLLEGFKVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYACA (Photosystem II reaction center protein H OS=Cyanidium caldarium GN=psbH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            +T  G LL+PLNS+YGKVAPGWGTTP+MG+ MALF +FL II +IYNSS++L+ + ++
Sbjct:    4 KTRLGELLRPLNSQYGKVAPGWGTTPIMGIFMALFLLFLIIILQIYNSSLILENLDIS 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ANAVT (Photosystem II reaction center protein H OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGI 261
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV MALF VFL II ++YN S+L+  +
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMALFLVFLLIILQLYNKSILIQDV 58          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ANASP (Photosystem II reaction center protein H OS=Anabaena sp. (strain PCC 7120) GN=psbH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   94 KRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGI 261
            +RT  G +L+PLNSEYGKVAPGWGTTP+MGV MALF VFL II ++YN S+L+  +
Sbjct:    3 QRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFMALFLVFLLIILQLYNKSILIQDV 58          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_GRATL (Photosystem II reaction center protein H OS=Gracilaria tenuistipitata var. liui GN=psbH PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLNSEYGKVAPGWGTTP+MGV M LF +FL II +IYNSS++L+ + ++
Sbjct:    4 RTRLGEILRPLNSEYGKVAPGWGTTPIMGVFMLLFFLFLLIILQIYNSSLILENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_CYAME (Photosystem II reaction center protein H OS=Cyanidioschyzon merolae GN=psbH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLNS+YGKVAPGWGTTP+MGV M LF +FL II +IYNSS+LL+ + ++
Sbjct:    4 RTRLGEILRPLNSQYGKVAPGWGTTPIMGVFMVLFLLFLVIILQIYNSSLLLNDVQVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PORYE (Photosystem II reaction center protein H OS=Porphyra yezoensis GN=psbH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLNSEYGKVAPGWGTTP+MG+ M LF +FL II +IYNSS++L+ + ++
Sbjct:    4 RTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFLFLLIILQIYNSSLVLENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_PORPU (Photosystem II reaction center protein H OS=Porphyra purpurea GN=psbH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.707e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLNSEYGKVAPGWGTTP+MG+ M LF +FL II +IYNSS++L+ + ++
Sbjct:    4 RTRLGEILRPLNSEYGKVAPGWGTTPIMGIFMLLFFLFLLIILQIYNSSLVLENVDVD 61          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_EUGGR (Photosystem II reaction center protein H OS=Euglena gracilis GN=psbH PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   52 MATQTVEGSSRARPKRTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLD 255
            M T +   +S ++ K T+ G +LKPLNS+YGKV PGWGT  +M + M LFA+FL+II EIYNSSV+LD
Sbjct:    1 MTTISKNKTSNSKGKTTTLGTILKPLNSKYGKVLPGWGTAGIMLIFMTLFAIFLTIILEIYNSSVILD 68          
BLAST of DR403354 vs. ExPASy Swiss-Prot
Match: PSBH_ODOSI (Photosystem II reaction center protein H OS=Odontella sinensis GN=psbH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   97 RTSAGGLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSII*EIYNSSVLLDGISLN 270
            RT  G +L+PLN+EYGKVAPGWGTTP+MGV M  F VFL II +IYNSS++++ + ++
Sbjct:    4 RTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMLAFLVFLLIILQIYNSSLIIENVDVD 61          
The following BLAST results are available for this feature:
BLAST of DR403354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBH_CYAP72.562e-1567.80Photosystem II reaction center protein H OS=Cyanot... [more]
PSBH_CYACA2.562e-1562.07Photosystem II reaction center protein H OS=Cyanid... [more]
PSBH_ANAVT2.562e-1566.07Photosystem II reaction center protein H OS=Anabae... [more]
PSBH_ANASP2.562e-1566.07Photosystem II reaction center protein H OS=Anabae... [more]
PSBH_GRATL3.346e-1563.79Photosystem II reaction center protein H OS=Gracil... [more]
PSBH_CYAME4.370e-1563.79Photosystem II reaction center protein H OS=Cyanid... [more]
PSBH_PORYE5.707e-1562.07Photosystem II reaction center protein H OS=Porphy... [more]
PSBH_PORPU5.707e-1562.07Photosystem II reaction center protein H OS=Porphy... [more]
PSBH_EUGGR7.454e-1557.35Photosystem II reaction center protein H OS=Euglen... [more]
PSBH_ODOSI9.735e-1560.34Photosystem II reaction center protein H OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244L08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244L08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403354 ID=DR403354; Name=DR403354; organism=Citrus sinensis; type=EST; length=610bp
GCCGGGGGGTATACAAAGTCAACAGATCNNNATCNNNNCGAAATAGGATT
TATGGCTACACAAACAGTTGAGGGTAGTTCTAGAGCTCGTCCAAAAAGAA
CTTCTGCAGGGGGGTTGTTGAAACCCTTGAATTCGGAATATGGTAAAGTT
GCTCCTGGATGGGGAACTACTCCTTTGATGGGAGTCGCAATGGCTTTATT
TGCGGTATTCCTATCTATTATTTAGGAGATTTATAATTCGTCCGTTTTAC
TGGACGGAATTTCACTGAATTAGAATGAAATTTACAAGAATCACAAAATA
TTACCTTTTAAATAAGCATTTAGGTATCGGATTTTGATTTTCGTTGATTG
GTAGTTCGACCGCGAATTTTTTATTTCTGTATTTCCGGAATATGAGTGTG
CGACTTGTTCGAATTGATCCTATTGATAGTACAGAGCATAGATCTGTCGT
CTTGATCGAGATGGCTTTACTCCGTCGGATATTCATTCGAGTATCTGGAG
CACGGAATATATGAAATAGATCACGAAGTACTCGAACTATGATTCATACT
TAATATTCAGACCCCTTGGCCGGATTCAAAAAATTTTTCCGGAAAAAAAA
AAAAAAAAAA
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