DR403348

Overview
NameDR403348
Unique NameDR403348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:426..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.758e-30
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 2
Query:  107 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 550
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  101 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  227 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            AR+DWKETP+ HV   D+PGL+           R+L +SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  221 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            ++AR+DWKETP+ HV   D+PGL+           R+L +SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  203 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 493
            R+TS   + AR+DWKET + H    D+PGL+            +L +SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  329 ILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 550
            IL ISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  119 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.323e-19
Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 2
Query:   44 LSXXLASQFAIMSLIPSIFGG--RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 493
            ++  LAS  A  +L+P   GG  R   V +   L   DPF       L + P      + +  + AR+DW+ET  AH    D+PG+R           R+L ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   16 IAVVLASTAADGALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.422e-18
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  188 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILHISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L +SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of DR403348 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  185 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILHISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 496
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DR403348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ2.758e-3050.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ5.383e-2644.7818.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN5.951e-2556.6722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA5.951e-2554.3522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH4.265e-2351.0222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN4.715e-2271.62Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ8.043e-2244.0917.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ8.323e-1939.2423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.422e-1845.0521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE6.595e-1641.5117.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K23 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403348 ID=DR403348; Name=DR403348; organism=Citrus sinensis; type=EST; length=605bp
AGGGGATCTTCAAATTGACTTGATCAAAGAANNNNCGAAGTTGTTGAGCA
NNNAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTC
GGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGA
TCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGG
CTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCACATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGT
GGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTC
CTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGC
TAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATA
AATTT
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