DR403344

Overview
NameDR403344
Unique NameDR403344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:100..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.142e-35
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 3
Query:  138 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 428
            +++KREL FKE+GQEYAQVLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+N
Sbjct:   19 NEQKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARIN 115          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  132 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 428
            ++D  KREL++KE+GQEYAQ+ +MLGNGR EA C DG KR+ HIRGK+ KKVW+  GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE+ ++N
Sbjct:   18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKIN 116          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  132 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 428
            E ++EKREL + E+GQ YAQV +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPE+ ++N
Sbjct:   18 ENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKIN 116          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  135 ADDEKRELVFKEDGQE-YAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES 416
            +D+E R+ +   +G E +A V  MLG  R +  C+DGT+R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + +S
Sbjct:    2 SDNEGRKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  138 DDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 413
            +D ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    4 NDSRKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  150 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 389
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  150 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 389
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  150 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 389
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  150 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 389
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DR403344 vs. ExPASy Swiss-Prot
Match: IF1A_SULIK (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  150 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 389
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of DR403344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
IF1A_DICDI5.142e-3572.16Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST1.400e-3263.64Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO9.076e-3265.66Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_NATPD2.483e-1340.00Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_HALMA7.225e-1336.96Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_SULIY2.102e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN2.102e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM2.102e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL2.102e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIK2.102e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403344 ID=DR403344; Name=DR403344; organism=Citrus sinensis; type=EST; length=724bp
GGGGAGAAACAGATTGATTTCATCTTGCTGCTTTTTAACTCTCCGACTCC
ACCTGCTCCCCCAAAGTAGAATTAGAAACCATGCCGAAGAATAAGGNNNA
GGGAGGAAAGAACAGGAAGAGGGGAAAGAATGAAGCTGACGACGAGAAGC
GTGAGCTTGTCTTCAAGGAAGACGGACAGGAATATGCCCAAGTCCTTCGT
ATGCTCGGCAATGGTCGGTGTGAAGCTATGTGCATCGATGGAACCAAGCG
TCTTTGCCACATCCGTGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTG
GTGATATAATACTTGTTGGCCTACGTGATTATCAGGATGACAAGGCTGAT
GTCATCCTCAAGTATATGCCCGACGAGGCAAGGCTTCTGAAGGCTTATGG
TGAACTTCCAGAGAGTACCCGTCTCAATGAGGGCATTGCTGGTGGTCTTG
ATGAAGAGGATGATGGCGCTGATAATGATTACATCGAGTTTGAAGACGAA
GATATTGATAAGATCTAGGCTCCGAGAATCGACTCTGTCTGGGGTTTATG
TTCAATATTTAGCAAAAATGGAGTATGCCAATGTATTGGTTACTTAAAAG
CTGAAAATATGTGTTTGCAGCTTATATATTTGGAATTTTTAATGGTGAGC
CTGTCATATTTTGTGTAACGCCTATTACTTGCTTATTAATTTTGTTTAGT
TCTGCACTTTTTTTGAAGTGGTAT
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