DR403336

Overview
NameDR403336
Unique NameDR403336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig92 contig Csv1_Contig92:195..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  128 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 207          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  128 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 207          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KE+  + KP +EHL++ LHVL+  E  E+    +L  AVA ++ LL P  E  D  KK+QL ELA++NGT R+
Sbjct:  182 GSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 SVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            S++D  KEE+ + KP +EHLNE LHVL+  E  +     ++  AV  ++ LL P  E  D+ KK QL ELA+LNGT R+
Sbjct:  128 SMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTYRD 206          
The following BLAST results are available for this feature:
BLAST of DR403336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
QKI_FELCA1.801e-1247.50Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CANFA1.801e-1247.50Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN1.801e-1247.50Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA1.801e-1247.50Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIB_DANRE1.801e-1247.50Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIA_XENLA1.801e-1247.50Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKI_CHICK2.352e-1247.50Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
HOW_DROME1.167e-1145.00Protein held out wings OS=Drosophila melanogaster ... [more]
QKIA_DANRE1.991e-1145.57Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403336 ID=DR403336; Name=DR403336; organism=Citrus sinensis; type=EST; length=769bp
GGGGTTCAGTCAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCT
GGATATGAGCATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGAATT
TCCAGAGGATATAATAAATTCCCGCTTGGATCATGCTGTAGCAATACTAG
AGAACCTTTTGAAGCCCGTGGATGAATCCTTGGATCATTACAAGAAGCAA
CAACTGCGGGAATTAGCTATGCTGAACGGTACTCTAAGAGAAGAAAGCCC
AAGCATGGGTCCGAGTATGAGTCCTAGTATGTCGCCCTTTAACAATGCTG
GAATGAAACGCGCCAAGACCGGAAGATAACATGTTATACATATCAATGAT
GAAATGGACCATCGATGAACCACTGGATCACTGCAGCTGATGGATTGCTG
TCCTGACGATCTTCATTGGTTTTGTTCTTCAGAACCTTGGGGAGGGACTT
GATTCGAGAACAGTTGGTCGAAATCCTGAGTTAGTTTTGCGCTCAACTGT
TGGCATCTCAGACGGGTATCTGCTTCCCATGTTTGTGTTCTATATAGCTA
ACATGTTTGTCAGCAATCATGATTCTTTGGTGTATTATTCCTCTTGAGTA
TCGAATTTGTTACTTAATGGATTAAAAGAAACTCATTCCCTAATTAATTT
TTATTTGCTATTCCAGCCCGCAGCTGAAGTGATATGACCTTTGAATGTAC
TTTGCTAGATACTTTTGCCTGCTATTCACTTGAAACAGATGACCAATAAT
TAATAATTGCTTTGTAATT
back to top