DR403327

Overview
NameDR403327
Unique NameDR403327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 75/227 (33.04%), Postives = 112/227 (49.34%), Query Frame = 1
Query:   76 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKEL--PRENIQVATKFGF---VELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH-------AVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            VP   LG  GL+VS    G     G  N     E   + +K A+  GI  FDTA+ Y    +E ++GKA+KEL   R    + TK  F    +L  T+ + +   +++     ASL+RL + Y+D+   HR D SVP+EE +    +L+++GK  Y G SE S   I  AH        + P+ A Q +++   RD  E +++PL +  G G   + PL  G   GK
Sbjct:   13 VPFRFLGRSGLKVSAFSLGGWLTYG--NEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSR---KHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHIATKYNLIAPV-ADQPQYNYLTRDHFEKDLLPLQQIYGYGATVWSPLKSGILTGK 233          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   76 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            +P   LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 306          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 65/224 (29.02%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   76 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            +P   LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 306          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 66/219 (30.14%), Postives = 111/219 (50.68%), Query Frame = 1
Query:   91 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  LK+    R ++ + TK  +   G  +   +G + +++     ASL+RL +EY+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 68/228 (29.82%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   64 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 68/228 (29.82%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   64 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 68/228 (29.82%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   64 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 68/228 (29.82%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   64 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK 254          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 64/219 (29.22%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   91 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of DR403327 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 64/219 (29.22%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   91 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGFFGGK 717
            LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + + PL  G   GK
Sbjct:   83 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 295          
The following BLAST results are available for this feature:
BLAST of DR403327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
KCAB_SCHPO5.371e-1933.04Putative voltage-gated potassium channel subunit b... [more]
KCAB1_RABIT9.161e-1929.02Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN9.161e-1929.02Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK9.161e-1930.14Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB2_HUMAN2.041e-1829.82Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN2.041e-1829.82Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT2.665e-1829.82Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE2.665e-1829.82Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT3.481e-1829.22Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU3.481e-1829.22Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244J19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244J19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403327 ID=DR403327; Name=DR403327; organism=Citrus sinensis; type=EST; length=737bp
GGCCGGGGGAAAGAATACTAAAACAAAGAAACCGAAATNNNNGCTGCAAG
TATGGCAGAAGATAAGAAACTCCAAGTTCCAAGAGTGAAACTTGGAACCC
AAGGCCTTGAGGTTTCAAAGCTGGGGTTTGGATGCATGAGCCTCAGTGGC
GGCTATAATTCTCCACTCTCTGAAGAGGATGGCATCTCAATAATAAAGCA
TGCTTTCAGTAAAGGAATCACTTTCTTTGACACTGCTGATAAATATGGAC
CATATACTAATGAAATTCTTCTTGGAAAGGCCTTGAAGGAGTTACCTAGA
GAAAACATACAAGTGGCCACAAAGTTTGGGTTTGTAGAATTGGGATTTAC
TTCTGTGATCGTGAAGGGTACCCCTGAGTATGTGCGCTCGTGTTGTGAAG
CTAGTTTGAGGCGCCTTGATGTGGAATATATTGATCTGTACTATCAACAT
AGAGTGGACACATCAGTTCCCATAGAGGAAACCATTGGCGAAATGAAAAA
GCTGGTGGAAGAGGGTAAAATCAAGTACATAGGATTATCTGAGGCTAGCC
CAGATACAATTAGGAGAGCACATGCTGTTCATCCCATCACAGCTGTACAA
CTGGAATGGTCCCTTTGGGCTCGTGACATTGAGAATGAGATAGTACCACT
TTGCAGGGAGCTTGGCATTGGAATAGTTCCATACTGTCCTCTTGGTCGTG
GATTTTTCGGTGGTAAAGCTGTTGTGGAAAGTGTGCC
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