DR403304 | Citrus Genome Database

Overview


Name	DR403304
Unique Name	DR403304
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	554

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 6.366e-15
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLA 438
            GPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:   38 GPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112

HSP 2 Score: 35.4242 bits (80), Expect = 6.366e-15
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 2

Query:  113 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            G VI   +  AW+ QL K  E  + +VVDFTA+W
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATW 36

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.077e-14
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-14
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + E  +LVVVDF+A+W
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.077e-14
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAK 429
            GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:   33 GPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-14
Identity = 12/25 (48.00%), Postives = 18/25 (72.00%), Query Frame = 2

Query:  140 EAWNEQLQKSNETKQLVVVDFTASW 214
            EA+ E L  + +  +LVVVDF+A+W
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.077e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 24.6386 bits (52), Expect = 1.077e-14
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + E  +LVVVDF+A+W
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.400e-14
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 24.6386 bits (52), Expect = 1.400e-14
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + E  +LVVVDF+A+W
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.819e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 23.8682 bits (50), Expect = 1.819e-14
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 2

Query:  140 EAWNEQLQKSNETKQLVVVDFTASW 214
            +A+ E L  + +  +LVVVDF+A+W
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.819e-14
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKH 432
            GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:   33 GPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104

HSP 2 Score: 24.6386 bits (52), Expect = 1.819e-14
Identity = 12/25 (48.00%), Postives = 18/25 (72.00%), Query Frame = 2

Query:  140 EAWNEQLQKSNETKQLVVVDFTASW 214
            EA+ E L  + +  +LVVVDF+A+W
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.364e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 23.0978 bits (48), Expect = 2.364e-14
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + +  +LVVVDF+A+W
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.072e-14
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 23.0978 bits (48), Expect = 3.072e-14
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + +  +LVVVDF+A+W
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATW 31

[Close]

BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.992e-14
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1

Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

HSP 2 Score: 23.0978 bits (48), Expect = 3.992e-14
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2

Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + +  +LVVVDF+A+W
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATW 31

The following BLAST results are available for this feature:

BLAST of DR403304 vs. ExPASy Swiss-Prot

BLAST of DR403304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44


Match Name	E-value	Identity	Description
TRXH_CHLRE	6.366e-15	44.00	Thioredoxin H-type OS=Chlamydomonas reinhardtii GN...	[more]
THIO_SHEEP	1.077e-14	49.28	Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2	[more]
THIO_RAT	1.077e-14	49.30	Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2	[more]
THIO_PIG	1.077e-14	49.28	Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3	[more]
THIO_BOVIN	1.400e-14	49.28	Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3	[more]
THIO_CALJA	1.819e-14	49.28	Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3	[more]
THIO_MOUSE	1.819e-14	47.22	Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3	[more]
THIO_HUMAN	2.364e-14	49.28	Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3	[more]
THIO_MACMU	3.072e-14	49.28	Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2	[more]
THIO_RABIT	3.992e-14	47.83	Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S...	[more]

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Properties


Property Name	Value
Genbank description	CSAF-PNP1244I10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403304 ID=DR403304; Name=DR403304; organism=Citrus sinensis; type=EST; length=554bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGACTGTGGACAAGGTGGTTGGAGCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTATAGTGGTTATGGGAT
TGTG