DR403304

Overview
NameDR403304
Unique NameDR403304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-13
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHL 435
            GPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPTF F K  + V +  GA KE+L++ I K++
Sbjct:   33 GPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          

HSP 2 Score: 24.6386 bits (52), Expect = 1.138e-13
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  167 SNETKQLVVVDFTASW 214
            SN   +L+VVDF+A+W
Sbjct:   16 SNAGSKLIVVDFSATW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.478e-13
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPTF F K GK V +  GA KE+L++TI
Sbjct:   33 GPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          

HSP 2 Score: 22.7126 bits (47), Expect = 1.478e-13
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  179 KQLVVVDFTASW 214
            ++LVVVDF+A+W
Sbjct:   20 EKLVVVDFSATW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.470e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF-MFLKEGKTVDKVVGAKKEELQQTI 423
            GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF  F K+G+ V +  GA KE+L+ TI
Sbjct:   33 GPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          

HSP 2 Score: 23.0978 bits (48), Expect = 5.470e-13
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASW 214
            A+ E L  + +  +LVVVDF+A+W
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.195e-12
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  220 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTI 423
            P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:   38 PSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          

HSP 2 Score: 23.8682 bits (50), Expect = 1.195e-12
Identity = 9/33 (27.27%), Postives = 17/33 (51.52%), Query Frame = 2
Query:  116 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            +V+   + E+WN  + ++      +V  FTA W
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALW 35          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.515e-12
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLATASA 450
            GPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +  TI KH ++  A
Sbjct:   35 GPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          

HSP 2 Score: 25.7942 bits (55), Expect = 2.515e-12
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASW 214
            NE L+KS ++ +L++VDF A+W
Sbjct:   13 NEILEKS-DSNRLIIVDFFANW 33          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.627e-12
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTV-DKVVGAKKEELQQTIAKH 432
            GPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPTF F K GK + D V GA +  L++ I K+
Sbjct:   33 GPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          

HSP 2 Score: 24.6386 bits (52), Expect = 2.627e-12
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  182 QLVVVDFTASW 214
            +LVV+DFTASW
Sbjct:   21 KLVVIDFTASW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 1.261e-11
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  199 FHCFMGGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIA 426
            F+    GPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPT +  K GK V KVVGA    ++Q IA
Sbjct:   25 FYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          

HSP 2 Score: 21.1718 bits (43), Expect = 1.261e-11
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  182 QLVVVDFTASW 214
            +LVVVDF A+W
Sbjct:   19 KLVVVDFYATW 29          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.756e-11
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKH 432
            GPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPTF F K G+ +D+  GA ++ L+Q I  H
Sbjct:   33 GPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          

HSP 2 Score: 25.409 bits (54), Expect = 2.756e-11
Identity = 12/32 (37.50%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  119 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            V+    + A++  L+ + +  +LVVVDFTA+W
Sbjct:    2 VVHIENLNAFSAALKNAGD--KLVVVDFTATW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.759e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLA 438
            GPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G +VD ++GA    L+Q I K+ A
Sbjct:   31 GPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          

HSP 2 Score: 20.7866 bits (42), Expect = 2.759e-11
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  182 QLVVVDFTASW 214
            +LV+VDF A W
Sbjct:   19 ELVIVDFFAEW 29          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  199 FHCFMGGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHLA 438
            F+    GPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPTF+F K G  ++ + G  ++EL+Q + +H++
Sbjct:   34 FYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
The following BLAST results are available for this feature:
BLAST of DR403304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
THIO_OPHHA1.138e-1341.10Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK1.478e-1347.83Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PONAB5.470e-1348.57Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRXL4_ARATH1.195e-1248.53Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
NGLY1_CAEBR2.515e-1238.46Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_GEOCY2.627e-1247.95Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRX1_YEAST1.261e-1144.74Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_ICTPU2.756e-1141.89Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_PLAF72.759e-1143.24Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO1_CAEEL3.092e-1137.50Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403304 ID=DR403304; Name=DR403304; organism=Citrus sinensis; type=EST; length=554bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGACTGTGGACAAGGTGGTTGGAGCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTATAGTGGTTATGGGAT
TGTG
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