DR403304

Overview
NameDR403304
Unique NameDR403304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 3.429e-11
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAK 429
            GPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L+  IA+
Sbjct:  481 GPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          

HSP 2 Score: 22.7126 bits (47), Expect = 3.429e-11
Identity = 14/45 (31.11%), Postives = 24/45 (53.33%), Query Frame = 2
Query:   80 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW 214
            P +  M   E  +V    + E +   L+++ E  +LV VDF+A+W
Sbjct:  437 PEEETMEFPEGDKVKVILSKEDFEASLKEAGE--RLVAVDFSATW 479          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 3.582e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHL 435
            GPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPT +F K GK V +VVGA    ++Q IA ++
Sbjct:   32 GPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          

HSP 2 Score: 21.1718 bits (43), Expect = 3.582e-11
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  182 QLVVVDFTASW 214
            +LVVVDF A+W
Sbjct:   20 KLVVVDFFATW 30          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.582e-11
Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHL 435
            GPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   33 GPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          

HSP 2 Score: 21.557 bits (44), Expect = 3.582e-11
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASW 214
            N QL K++   +LVV+DF A+W
Sbjct:   12 NGQLTKASG--KLVVLDFFATW 31          
BLAST of DR403304 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 4.639e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  217 GPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKTVDKVVGAKKEELQQTIAKHL 435
            GPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   41 GPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          

HSP 2 Score: 20.7866 bits (42), Expect = 4.639e-11
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  161 QKSNETKQLVVVDFTASW 214
            Q +  + +LVV+DF A+W
Sbjct:   22 QLTKASGKLVVLDFFATW 39          
The following BLAST results are available for this feature:
BLAST of DR403304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
TXND2_HUMAN3.429e-1143.66Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRX2_YEAST3.582e-1142.47Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO2_DROYA3.582e-1141.89Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME4.639e-1141.89Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244I10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244I10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403304 ID=DR403304; Name=DR403304; organism=Citrus sinensis; type=EST; length=554bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCATGGGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGACTGTGGACAAGGTGGTTGGAGCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTATAGTGGTTATGGGAT
TGTG
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