DR403290

Overview
NameDR403290
Unique NameDR403290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:451..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 39/141 (27.66%), Postives = 65/141 (46.10%), Query Frame = 2 
Query:  155 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDEL 574
            L DWF  +      W++E ++  +GL  +GKTT ++++   +  +   PT      +++ G +  K +D+GG    R +W                   E+   S+ EL  LL    L  +P L+LGNK D+P A  E +L
Sbjct:    8 LLDWFKSLF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQL 143
The following BLAST results are available for this feature:
BLAST of DR403290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
AR8BA_DANRE8.621e-1127.66ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403290 ID=DR403290; Name=DR403290; organism=Citrus sinensis; type=EST; length=714bp
GGGGATTTCTAGTTTTTTCCTTCTTAGGTTTTGCTGGTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTCAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTGCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
CTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTAC
TACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGACAAGGA
GAGGTTTGCTGAGTCGAAAAGGGAGCTTGATGCCCTTCTTTCAGATGAAT
CCTTGGCCAATGTTCCATTCCTTATTTTGGGCAACAAAATTGATATCCCA
TATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTGGACTGACCAACTT
CACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCGTCCCC
TTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAGAGNNA
TTTAAGTGGCTGTC
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