DR403290

Overview
NameDR403290
Unique NameDR403290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:451..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 595
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 595
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 595
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 595
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E+++EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 2 
Query:  173 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLT 595
            G L S     KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   +KF  +D+GG    R +W                   +R  E++ EL  +++D  + +   LI  NK D+P A    E++  LGLT
Sbjct:    2 GKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT 142
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP LI  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2 
Query:  164 WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            +F  I +SL    +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W                   +R   SK EL A+L +E L     ++  NK D+  A +  E+   LGL                 R  ++F  S  +  G  E  +WL
Sbjct:    4 FFSSIFSSL-FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWL 173
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 49/170 (28.82%), Postives = 74/170 (43.53%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            K+ KI+ +GLDNAGKTT+L+    +  V+ +PT     EE+S   + F  +D+GG +  R+ W                    R    K +L  +L  E LA    L+L NK D+P A +  E+   LGL                 R  ++  C  V+  G  E  +W+
Sbjct:   16 KKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTL-----------RGARKWQINGCCAVKGEGLPEALEWI 174
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP LI  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145
[Close]
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 2 
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP LI  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145
The following BLAST results are available for this feature:
BLAST of DR403290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF6_PIG3.166e-1333.59ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE3.166e-1333.59ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN3.166e-1333.59ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK3.166e-1333.59ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_DROME3.166e-1333.33ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARL3_MOUSE4.135e-1336.15ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL1_HUMAN4.135e-1329.51ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL5_CAEEL5.400e-1328.82ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARL3_PIG5.400e-1336.15ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_HUMAN5.400e-1336.15ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403290 ID=DR403290; Name=DR403290; organism=Citrus sinensis; type=EST; length=714bp
GGGGATTTCTAGTTTTTTCCTTCTTAGGTTTTGCTGGTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTCAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTGCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
CTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTAC
TACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGACAAGGA
GAGGTTTGCTGAGTCGAAAAGGGAGCTTGATGCCCTTCTTTCAGATGAAT
CCTTGGCCAATGTTCCATTCCTTATTTTGGGCAACAAAATTGATATCCCA
TATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTGGACTGACCAACTT
CACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCGTCCCC
TTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAGAGNNA
TTTAAGTGGCTGTC
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