DR403290

Overview
NameDR403290
Unique NameDR403290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:451..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 45/130 (34.62%), Postives = 61/130 (46.92%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDN GKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP L+  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNGGKTTLLKQLASEDITHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEIAEGLNL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP LI  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  164 WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            +F  I +SL    +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W                   +R   SK EL A+L +E L     ++  NK D+  A +  E+   LGL                 R  ++F  S  +  G  E  +WL
Sbjct:    4 FFSSIFSSL-FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  206 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNF 601
            +A+++ LGLD AGKTT+L+ LK  RLV   PT     E L   G +    +D+GG    R  W                    R  E+  EL+ +L D ++A VPFL+L NK + P A    E+R  L L  F
Sbjct:   10 KAQVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERF 142          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 53/170 (31.18%), Postives = 71/170 (41.76%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            KEA+IL LGLDNAGKTT+L+ L+   +V   PT     E +    IKF+ +DLGG    R  W                   +R   +K E  A+L +E L     LI  NK D+P A  +  +   L L    +            R   +F    V+  G  E   WL
Sbjct:   16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKS------------RQWAIFKTCAVKGEGLFEGLDWL 173          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  164 WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            +F  I +SL    +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W                   +R   SK EL A+L +E L     ++  NK D+  A +  E+   LGL                 R  ++F  S  +  G  E  +WL
Sbjct:    4 FFSSIFSSL-FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKD------------RKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  164 WFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            +F  I +SL    +E +IL LGLD AGKTT+L+ L+   +V   PT     E ++   +KF+ +DLGG    R  W                   +R   SK EL A+L +E L     ++  NK D+  A +  E+   LGL                 R  ++F  S  +  G  E  +WL
Sbjct:    4 FFSSIFSSL-FGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKD------------RKWQIFKTSATKGTGLDEAMEWL 173          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +E +IL LGLDNAGKTTLL  L  E +    PTQ    + +     K   +D+GG +  R  W                   +RF E+ +EL  LL +E L+ VP L+  NK D+  AA   E+   L L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +LS++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  155 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTN 598
            LFD  +G        +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I+F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL++
Sbjct:   11 LFDGLFG--------KKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSS 150          
The following BLAST results are available for this feature:
BLAST of DR403290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARL3_DANRE5.400e-1334.62ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL3_BOVIN5.400e-1336.15ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARL1_BOVIN5.400e-1329.51ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL11_RAT5.400e-1335.34ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARF1_BRARP5.400e-1331.18ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT7.053e-1329.51ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE7.053e-1329.51ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL3_RAT9.211e-1335.38ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARF_CRYNE9.211e-1333.59ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_NEUCR1.203e-1231.08ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403290 ID=DR403290; Name=DR403290; organism=Citrus sinensis; type=EST; length=714bp
GGGGATTTCTAGTTTTTTCCTTCTTAGGTTTTGCTGGTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTCAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTGCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
CTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTAC
TACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGACAAGGA
GAGGTTTGCTGAGTCGAAAAGGGAGCTTGATGCCCTTCTTTCAGATGAAT
CCTTGGCCAATGTTCCATTCCTTATTTTGGGCAACAAAATTGATATCCCA
TATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTGGACTGACCAACTT
CACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCGTCCCC
TTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAGAGNNA
TTTAAGTGGCTGTC
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