DR403290

Overview
NameDR403290
Unique NameDR403290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:451..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  167 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            F  +L SL + +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:    5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  167 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            F  +L SL + +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:    5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   LI  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   LI  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 42/124 (33.87%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDEL 574
            KE +IL LGLD AGKTT+L+ LK  + V   PT     E ++   IKF  +D+GG    R +W                    R +E+++EL  ++SD  + +   L+L NK D+P A S  ++
Sbjct:   20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQI 143          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/149 (28.86%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  176 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKV 622
            IL    L ++E ++L LGLDNAGKTT+L  L +E + +  PT       L +  ++F  +D+GG +  R  W                    R  E +  L  LL +E L     L+L NK D+  A S +E+   L ++ + +   ++
Sbjct:    6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRI 154          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 53/182 (29.12%), Postives = 75/182 (41.21%), Query Frame = 2
Query:  167 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            F+  + SL   +KE +IL +GLD AGK+TLL+ LK   +V   PT     E +    +    +D+GG    R +W                   ER  E K E+D LL  + L     L+  NK D+  A +  E+   L L +    K  V              CS +R  G  E F W+
Sbjct:   12 FFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQ------------PCSAIRSDGIYEGFDWV 181          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 41/130 (31.54%), Postives = 62/130 (47.69%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    R +W                    R  E++  +  +L+++ L N  +L+  NK D+P A S  E+   LGL
Sbjct:   16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
The following BLAST results are available for this feature:
BLAST of DR403290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF3_HUMAN2.680e-1233.10ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN2.680e-1233.10ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_LOCMI2.680e-1233.59ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME2.680e-1233.59ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF2_SCHPO3.500e-1233.87Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARL_SCHPO4.571e-1228.86ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARFJ_DICDI4.571e-1229.12ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF2_ORYSJ4.571e-1232.82ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_YEAST4.571e-1231.54ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_ORYSJ4.571e-1232.82ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403290 ID=DR403290; Name=DR403290; organism=Citrus sinensis; type=EST; length=714bp
GGGGATTTCTAGTTTTTTCCTTCTTAGGTTTTGCTGGTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTCAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTGCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
CTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTAC
TACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGACAAGGA
GAGGTTTGCTGAGTCGAAAAGGGAGCTTGATGCCCTTCTTTCAGATGAAT
CCTTGGCCAATGTTCCATTCCTTATTTTGGGCAACAAAATTGATATCCCA
TATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTGGACTGACCAACTT
CACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCGTCCCC
TTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAGAGNNA
TTTAAGTGGCTGTC
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